Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2290 ATGATGTTTCCTGAAAAATTGGGGGCACAGGAATCTCTTTGTCAGGATTTGCACAGTTTGAGCGTGTCCAAGCGTCTTGTGAGGAGTGTCAGCCAGAAGTTGAGGAAGAAAAACAACGCTAGTGCGTCGGAAGAAGATGATGGTGTCAATGGAGTTTCTTTGAGATGCTTAAATCTGTATGGTAGGGGTGGGGGCTGCAAGGTAGGTGCTGACACTGGTGATGAATTTGGTGATTCGAGCACTAGAAGGAGATCTAGTGCCAGTGAAGAAGGGAAGGGATATAAACCAGTTTGTGGCCCTGAAGAAACTGTCGTTGATTGCTTCTCTTATGGGGTGAAGGACAGGTTTTGGAGGAGGCACAGCAGAAAAAATTCTGAAGTTGACGAATTGATAACAAACAATAGGATGCATGTCTTTCTTCCAGATGATATTCTTGAAATGTGTTTGGTCAGGCTTCCATTGACTAGTCTCATGAATGCTCGCCTTGTTTGCAAAAAATGGAGGTCCTTGACCACCGCCCCTAGATTCCTCCAAATGAGAAGGGAGGGTTCATATCAAAATCCATGGTTGTTTATGTTTGGTGCTGTTAAAGATGGCTTTTGCTCTGGTGAGATCCATGCATTGGATGTGTCAATGAATCAATGGTATAGGATGGATGCTAGTTTTCTCAGAGGAAGGTTCTTGTTCTCTGTCGCTAGTGTGCAGGATGATATCTTCATTGTTGGAGGATGTTCTAGCTTGACGAACTTTGGTAAAGTGGATAGGAGCTCGTTCAAGACACACAAAGGAGTCCTTGTGTTTAGTCCGTTGACAAAATCTTGGCGCAAATCACCAGCTATGAAATATGCTAGATCACTTCCTGTATTAGGAGTAATTGAGGTCAATTTAGACTTTCCAGCTTGTCAAAGTCATCAAAGTCGACAGGATAGACGATTCCCAAGATCAAGGATTGGCGGGGTTTCAGATGTGTACGAGGATCCGCATAAGCTTTCAATGAGACGTCATTGCAGATCTTTTAATGAGGGTGAAGCTTCATCTTTGCCTGGTAGAAAGGCATGCAAGTTCCTGAGACAAAGAAGTGATCATTCAAGCTCAAAGGGAAGTAGAAGGTTTTTGCTGATAGCTGTAGGAGGTCTGGGATCTTGGGATGAGCCTCTGGACTCTGGAGAAGTATATGATTCTGTTTCAAATAAATGGACTGAAATCCCTAGATTGCCTTTTGATTTCGGGGTCGCTTGTTCTGGAATTGTTTGTGGCAGGATGTTTTATGTTTATTCCGAGACAGACAAGCTTGCTGCATATGACATAGAAAAGGGTTTCTGGATTGCAATTCAAGCCGTTCCAATCCCACCCCATGTACATGAGTACTACCCGAAACTTGTGTCTTCTAATGGCCGTCTTTTCATGCTCTCAGTGTCTTGGTGTGAAGGGGATGGCCAAATTGGCCGGCGAAACAAGGCTGTTAGAAAATTATGGGAGTTAGATCTCGTGTATCTTACCTGGACTGAAGTCTCAGTGCATCCTGATGCTCCAATGGACTGGAATGCTGTTTTTGTATCAGACAAGAACCTCATTTTTGGGGTAGAGATGTTCAAAATATTTGGTCAGGTGTTGGATTTTTTCACTGTATGTGATGTGTCTAATATTGCAAATTGGAAGCATATTTCAAGGAATCATGTTACTCATGAGCTGGATGGGTCATCATGCTTGACCAAATCTGTGGCAGTGTTACACCTTTGA 1740 0.4328 MMFPEKLGAQESLCQDLHSLSVSKRLVRSVSQKLRKKNNASASEEDDGVNGVSLRCLNLYGRGGGCKVGADTGDEFGDSSTRRRSSASEEGKGYKPVCGPEETVVDCFSYGVKDRFWRRHSRKNSEVDELITNNRMHVFLPDDILEMCLVRLPLTSLMNARLVCKKWRSLTTAPRFLQMRREGSYQNPWLFMFGAVKDGFCSGEIHALDVSMNQWYRMDASFLRGRFLFSVASVQDDIFIVGGCSSLTNFGKVDRSSFKTHKGVLVFSPLTKSWRKSPAMKYARSLPVLGVIEVNLDFPACQSHQSRQDRRFPRSRIGGVSDVYEDPHKLSMRRHCRSFNEGEASSLPGRKACKFLRQRSDHSSSKGSRRFLLIAVGGLGSWDEPLDSGEVYDSVSNKWTEIPRLPFDFGVACSGIVCGRMFYVYSETDKLAAYDIEKGFWIAIQAVPIPPHVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGRRNKAVRKLWELDLVYLTWTEVSVHPDAPMDWNAVFVSDKNLIFGVEMFKIFGQVLDFFTVCDVSNIANWKHISRNHVTHELDGSSCLTKSVAVLHL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2290 579 SMART fbox_2 140 180 IPR001810 GO:0005515
Lja1g2290 579 MobiDBLite consensus disorder prediction 71 94 - -
Lja1g2290 579 PANTHER OS09G0555300 PROTEIN 2 579 - -
Lja1g2290 579 PANTHER OS09G0555300 PROTEIN 2 579 - -
Lja1g2290 579 Pfam Kelch motif 373 406 IPR006652 GO:0005515
Lja1g2290 579 Pfam F-box domain 140 176 IPR001810 GO:0005515
Lja1g2290 579 ProSiteProfiles F-box domain profile. 134 180 IPR001810 GO:0005515
Lja1g2290 579 SUPERFAMILY Kelch motif 187 292 IPR015915 GO:0005515
Lja1g2290 579 MobiDBLite consensus disorder prediction 76 90 - -
Lja1g2290 579 Gene3D - 324 564 IPR015915 GO:0005515
Lja1g2290 579 SMART kelc_smart 237 294 IPR006652 GO:0005515
Lja1g2290 579 SMART kelc_smart 372 419 IPR006652 GO:0005515
Lja1g2290 579 Gene3D - 151 296 IPR015915 GO:0005515
Lja1g2290 579 SUPERFAMILY Kelch motif 372 527 IPR015915 GO:0005515
Lja1g2290 579 SUPERFAMILY F-box domain 139 202 IPR036047 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2290 - - gmx:100813797 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2290 1 26627922 26630710 Lja1g2290 1 26627922 26630710 ECH