LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g2285	ATGGCCACCACCCATGCAGCTCTAGCTTCTACAAGGATCCCCACAAACACCAAGTTTTCATCCAAGGCCTCTCACTCTTTCCCAGCCCAATGCTCCTCAAAGAGGCTTGAGGTGACAGAATTCTCTGGCCTAAGATCAAGTTCATGCGTCACCTATGCCAATAATGCTAGAGAGTCTTCCTTTTTTGATGTTGTAGCTGCCCAACTCACTCCCAAGGCAATTGGTTCAACTGCTGTGAGGGGAGAAACTGTGGCTAAGTTGAAGGTAGCGATCAATGGTTTTGGACGTATTGGTAGAAATTTCCTGCGCTGCTGGCACGGCCGAAAGGACTCACCCCTTGAGGTGATTGTTGTCAATGACAGTGGTGGTGTGAAGAATGCTTCGCATCTGTTGAAATATGATTCTATGCTGGGAACTTTTAAAGCAGATGTGAAAATACTAAATGAGAACACCATTACAGTTGATGGTAAGCCCATCAAGGTTGTCGCAAACAGGGACCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGATATTGTTATTGAGGGAACAGGAGTGTTTGTGGATGGCCCTGGTGCTGGAAAACACATCCAAGCAGGTGCCAAGAAAGTTATCATCACTGCTCCTGCAAAGGGTGCTGATATTCCAACTTATGTTGTTGGAGTAAATGAAGGGGACTACGGTCATAATGTCGCCGACATTATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTCGTGAAGATCCTGGATGAAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACACATTCCTACACAGGAGATCAGAGGCTTTTGGATGCTTCTCACAGGGACTTGAGAAGAGCTAGGGCTGCAGCTCTGAACATTGTCCCCACCAGCACCGGAGCGGCCAAGGCCGTGTCTCTGGTGCTGCCACAGCTCAAGGGAAAGCTCAATGGGATTGCCCTCCGCGTGCCGACACCCAATGTTTCGGTGGTTGACCTTGTGGTGAATGTTGAGAAGAAGGGTATCTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAAGGGCCACTGAAAGGTGTGTTGGATGTGTGTGATGTTCCACTGGTGTCTGTGGACTTCAGGTGCACTGATGTTTCTTCTACTATTGACTCCTCATTGACCATGGTCATGGGAGATGATATGGTCAAAGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTGGTGGATTTGGCACATTTGGTTGCAAGCAAATGGCCAGGCGCAGCTGCTGCACCAGGGAGTGGAGACCCATTGGAGGAGTTCTGCGAGACAAACCCAGCTGATGAGGAATGCAAACTTTATGAATAG	1362	0.4831	MATTHAALASTRIPTNTKFSSKASHSFPAQCSSKRLEVTEFSGLRSSSCVTYANNARESSFFDVVAAQLTPKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNENTITVDGKPIKVVANRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYGHNVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAAAAPGSGDPLEEFCETNPADEECKLYE*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g2285	453	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	245	402	IPR020829	GO:0016620
	Lja1g2285	453	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC	3	453	-	-
	Lja1g2285	453	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	240	403	-	-
	Lja1g2285	453	Gene3D	Dihydrodipicolinate Reductase; domain 2	239	404	-	-
	Lja1g2285	453	SMART	gp_dh_n_7	87	240	IPR020828	GO:0051287
	Lja1g2285	453	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	88	414	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Lja1g2285	453	Gene3D	-	88	416	-	-
	Lja1g2285	453	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	3	453	IPR020831	GO:0016620
	Lja1g2285	453	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	317	334	IPR020831	GO:0016620
	Lja1g2285	453	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	358	373	IPR020831	GO:0016620
	Lja1g2285	453	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	234	252	IPR020831	GO:0016620
	Lja1g2285	453	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	196	209	IPR020831	GO:0016620
	Lja1g2285	453	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	261	277	IPR020831	GO:0016620
	Lja1g2285	453	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	88	189	IPR020828	GO:0051287
	Lja1g2285	453	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	238	245	IPR020830	GO:0016620
	Lja1g2285	453	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	86	256	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g2285	Lja-Chr1	26593216	26597055	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g2285	K05298		-	gmx:732571	782.326

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g2285	1	26593216	26597055	Lja1g2285	1	26593216	26597055	ECH