Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2279 ATGAAAGGAGGAAGAGGCATGTCGATGTTGAATCTGTTTCCGTTTCTTCTCACATTTACCATTCTATCCTCCCCTGCACTCTCCCTCTCCGATCTCATCCTCACCAAGGTTGACCGTCGTATTGATCTAACATCACAAATCGCGCGCATCTCTACTTCATTGAAGGTGGAGAATGCAGGATCTGATCTGGTATCAGAAATCTTGTTGTCCTTTCCTGAAAATCAAGCAAATCACTTGGCGCATTTGACTGCTAAACTTAGTGAAGGGAAGGGAAAAGGGAAAACATCTGGTGTTGGTTTACCTGTTGAAGTTGTGCATCCTGAGGGTGTGCCTTCTTCATTGACAATTTATTCTGTAACTTTGCCTAAGGGCATTGGGAAAGGCGATAGTTTGACGTTGGATGTATTGGCGGTTTTTACGCACACGTTGGAACCGTTTCCGGAAAAAATTACTCAAGCTGATATCCAGCTTCTATTGTTTCAAGAGAGTGCACACTATCTTTCTCCTTATGCAGTCAAGTTCCAATCACTCACTGTTAAGTTGCCTGATGCGAGAATTGAGTCGTATACGAAACTGGATAGCGCGAAGCTTCAGGGATCTGAATTGAAATATGGTCCTTATGAGAATCTTCCTCCGTTCTCGTACTTGCCGATAGTCGTTCACTTTGAGAATAATCGACCATTTGCTGTCGCAAAAGAGTTAGTGCGGGAGATTGAGATTTCACACTGGGGCAATGTGCAGGTCACTGAGCATTACAATCTCGTTCACGGTGGTGCTCAGATCAAAGGAGAATTTTCCAGACTTGATTATCAGTCCAGGCCACATGTGAGAGGTGCATCTTCCTTTAGGCGTCTTCTCGCCAAGCTTCCACCTAGAGCTCATTCAGTGTACTACAGGGATGAAATTGGCAACATTTCCACTTCTAGCTTATGGGGTGACTCAAAAAAGACGGAACTGGAGATCGAACCTAGGTACCCATTGTTTGGTGGCTGGAATAGTGCCTTTACCATTGGATATGGCTTACCACTTAAGGACTTCTTATTTGGATTGGATGGAAAGCGCTTCCTTAATATTACTTTCAGTACCCCTATCAATGATTTGGTGATTGACACTCTCTTTGTAAAGGTTGTTTTGCCAGAGGGTTCTAAAGATATCTCAGTATCTGTTCCATATCCTGTGAAGCAAAGCCAGGAGACAAAGTTTTCCCACTTGGATATTGCTGGTAGACCTGTCGTTGTGCTCGAGAAGAACAATGTTGTGCCTGAGCATAATGTGCATTTTCAGGTCTATTACAAGTTTAACAGTCTTTCTATGCTCAGGGAGCCTTTGATGTTGATTTCTGGTTTTTTCTTTCTGTTTGTTGCCTGCATTGCCTACGTACATGCAGATTTCTCAATCTCCAAGTCTTCTGCATCTTATTTGGCAAAGCTCCAGTGGGAAGAGGTACAAGCAACTGTTCGGCAGATTCATAATATCATTAGCCGTTGCTTAACCACACATGACAAGCTGGAAGCTTCTTTGCGTGATCTTTCTAGGACAGGTGATGTTCAAGCCTGCAAAGCAACTCGGAAATCTGTTGATAGCTCATTGAAAGAGCTCTCCAAAGAGTTGAAGTCACTGGTGGCATTCTTGCAGTCTTCTCCACAAGCCACTCCAGTATTATCCAAGGTGGAGGAAATTATTACGAAGGAGAGAGATTTGCAGGAAAAACTTATGGCAAAACACTCTACAGTTGTGGACTGTTATGAGAAGAAGTTGGGAGGAAGGGAAATTGAGAATCGGATTGCTTCACATCAGCAGAAAATCACAGCTTTGAGGCAGGAAATTGATGATCTTATGGACGTGATTGATGAGATATGA 1860 0.4323 MKGGRGMSMLNLFPFLLTFTILSSPALSLSDLILTKVDRRIDLTSQIARISTSLKVENAGSDLVSEILLSFPENQANHLAHLTAKLSEGKGKGKTSGVGLPVEVVHPEGVPSSLTIYSVTLPKGIGKGDSLTLDVLAVFTHTLEPFPEKITQADIQLLLFQESAHYLSPYAVKFQSLTVKLPDARIESYTKLDSAKLQGSELKYGPYENLPPFSYLPIVVHFENNRPFAVAKELVREIEISHWGNVQVTEHYNLVHGGAQIKGEFSRLDYQSRPHVRGASSFRRLLAKLPPRAHSVYYRDEIGNISTSSLWGDSKKTELEIEPRYPLFGGWNSAFTIGYGLPLKDFLFGLDGKRFLNITFSTPINDLVIDTLFVKVVLPEGSKDISVSVPYPVKQSQETKFSHLDIAGRPVVVLEKNNVVPEHNVHFQVYYKFNSLSMLREPLMLISGFFFLFVACIAYVHADFSISKSSASYLAKLQWEEVQATVRQIHNIISRCLTTHDKLEASLRDLSRTGDVQACKATRKSVDSSLKELSKELKSLVAFLQSSPQATPVLSKVEEIITKERDLQEKLMAKHSTVVDCYEKKLGGREIENRIASHQQKITALRQEIDDLMDVIDEI* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2279 619 Pfam Ribophorin I 34 459 IPR007676 GO:0006486|GO:0016021
Lja1g2279 619 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1 9 597 - -
Lja1g2279 619 Coils Coil 588 619 - -
Lja1g2279 619 PANTHER RIBOPHORIN I 9 597 IPR007676 GO:0006486|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2279 Lja-Chr1 26537080 26540737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2279 28 557 Miscellaneous Gene Families AT1G76400 68.113 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2279 K12666 - gmx:100817203 1009.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2279 1 26537080 26540737 Lja1g2279 1 26537080 26540737 ECH