Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2270 ATGGCGTCCATTTCCTGGTCTTGTTGTCTGCATCGGCGACCAACAATATCCGACCGCACAGCCTCTGCGGCCGACAAAGGTTTCTCACCTCCCATAACATTGGAGCATCATAAAAAAACACCATGTTTACTATCAGCACGCAATTCCTCCATTGAAGAAGGACATGCGGTTAACAGAAGACAACTTGTTTTCTACACGTCACTAGCTGCATTTGCAGCTGCCCCATCTACTGTCCTGAAGGCATTGGCACTCAATGATGTGGTTGAGGATGTTCGTATCTACATTGATGATGAGAACAAGTTCAAGATAGAGATTCCCCAAGATTGGGAAGTAGGAACAGGAGACTCTAGTGGGTTCAAATCATTAACTGCATTCTACCCCAAAGAGGCATCTAGTTCCAATGTGAGTGTTGCTATCACAGGGTTGGGGCCGGATTTCACTAAGATGGAATCGTTTGGCAAGGTTGATGAGTTTGCTGAGACTCTGGTTAGTGGGCTGGACAGAAGCTGGAGAAAACCGCCTGGTGTAGCTGCTAAACTCATAAATAGTAAATCATCTAAAGGAATTTATTATATCGAGTACTCGTTGCAAAATCCTGGTGAGAGTCGCAGACATCTATATTCAGCTATAGGGATGGCAACAAATGGTTGGTATAACAGACTGTATACTGTGACAGGACAGTATGTGGAAGAGGAAACAGACAAGTATGCTTCCGAAATTCAGAAGGCGGTCACATCATTTAAGTTCATATAA 753 0.4409 MASISWSCCLHRRPTISDRTASAADKGFSPPITLEHHKKTPCLLSARNSSIEEGHAVNRRQLVFYTSLAAFAAAPSTVLKALALNDVVEDVRIYIDDENKFKIEIPQDWEVGTGDSSGFKSLTAFYPKEASSSNVSVAITGLGPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKSSKGIYYIEYSLQNPGESRRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSFKFI* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2270 250 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC 37 250 - -
Lja1g2270 250 Pfam PsbP 91 249 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Lja1g2270 250 SUPERFAMILY Mog1p/PsbP-like 92 249 IPR016123 -
Lja1g2270 250 PANTHER - 37 250 - -
Lja1g2270 250 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 83 249 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2270 - - lja:Lj1g3v3404330.1 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2270 1 26458579 26461313 Lja1g2270 1 26458579 26461313 ECH