Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g2269 ATGGCGACAAAGTCCCCAACCACCGCCACTGAACCTCCTCCGTCTTCCTCCGCCGGAACACCTCCACCACCTCTCCCTCCTCCTCCTCTTCACCAACCACAGCCAGCGAAACCCGACGCCCCACCGTCGGAACCCAAACTCTCCGCCACTCCAGACGCTAACGTAATCCTGGTCCCCAGCCACTCCAGATGGTTCTCGTGGGATTCAATTCACCAATGCGAGGTTCGTCACCTCCCTGAGTTCTTCGATTCCTCTTCCAAGAGCCCTAGGGTTTACAAATACTACAGAAACTCCATCATCAAGTACTTCCGATACAATCCCAATCGGAAAATCACCTTCACCGATGTCCGCAAAATGCTCGTCGGAGACGTCGGTTCAATCCGCAGAGTGTTCGAGTTTCTTGAAGCGTGGGGTTTGATTAACTACCACCCCTCTTCGTCGTTTAGCAAACCCTTCAAGTGGGATGATAAAGATACCAAGGTTGATTCTGCTGAACCTCCTCCTCCTCCTGTTCGTGAAACCGCTAAGAGAGTCTGCAGTGGCTGCAAAGCCCTCTGCACCATTGCTTGCTTTGTCTGTGATAAGTATGATTTGACTCTGTGTGCGAGGTGTTATGTTCGGGGCAACTATAGAGTTGGTGTGAGTTCGTCGGATTTTAAGCGAGTGGAGATAAGTGAGGAGACGAAGACGGAGTGGACTGAGAAGGAAACCTTGAATCTTGTAGAAGCCATTTCGCATTATGGGGATGACTGGAAGAGGGTATCTCATCAGGTTGTTGGCAGGACGGAGAAGGAGTGTGTTGCTCATTTTCTGAAGCTTCCTTTTGGGGAGCAATTCCTAGGCTCTGCTGTGAGTGATGATGGTTGTGAGTTGAAACAGCATGCTGATGAATCGGAAACTGTTGCCTCCGCTGAATCTAATAAGAGAATGCGTCTCACACCTCTTGCGGATGCAAGCAATCCTATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCAGGGCCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCACTGACAACTTTGTCCGACGTTTACAAGTCAACTAGAATAAATTATCGGTCACTTCCAAAGAATACATTGCAGCAAGATGCTGGTGTCGCATCTAATGGTGGTAATAATTCAGATTCATTGCAAGGAGCTCGATTGAATGCAAGTTTACAGCTTGAGAAGGATGAATCAGATGTGGAAAAGGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGACAAGCTTGTTCATTTTGAAGATTTGGACCTGCTGATGGAAAAAGAAAGGCAGCAGTTAGAGCAAACGAAGAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTCAAAAACCATCTGCACCAAAGACTGGAGAATATCCACAAGGCAATCATGTAAAGACGACGACTTAA 1431 0.4724 MATKSPTTATEPPPSSSAGTPPPPLPPPPLHQPQPAKPDAPPSEPKLSATPDANVILVPSHSRWFSWDSIHQCEVRHLPEFFDSSSKSPRVYKYYRNSIIKYFRYNPNRKITFTDVRKMLVGDVGSIRRVFEFLEAWGLINYHPSSSFSKPFKWDDKDTKVDSAEPPPPPVRETAKRVCSGCKALCTIACFVCDKYDLTLCARCYVRGNYRVGVSSSDFKRVEISEETKTEWTEKETLNLVEAISHYGDDWKRVSHQVVGRTEKECVAHFLKLPFGEQFLGSAVSDDGCELKQHADESETVASAESNKRMRLTPLADASNPIMAQAAFLSALAGPEVAQAAAQAALTTLSDVYKSTRINYRSLPKNTLQQDAGVASNGGNNSDSLQGARLNASLQLEKDESDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKERQQLEQTKNMFFLDQLTLLFQKPSAPKTGEYPQGNHVKTTT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g2269 476 Pfam SWIRM domain 59 142 IPR007526 GO:0005515
Lja1g2269 476 ProSiteProfiles SWIRM domain profile. 56 151 IPR007526 GO:0005515
Lja1g2269 476 MobiDBLite consensus disorder prediction 15 45 - -
Lja1g2269 476 ProSiteProfiles SANT domain profile. 227 278 IPR017884 -
Lja1g2269 476 ProSiteProfiles Myb-like domain profile. 224 274 IPR001005 -
Lja1g2269 476 SUPERFAMILY Homeodomain-like 228 280 IPR009057 -
Lja1g2269 476 PANTHER SWI/SNF COMPLEX-RELATED 1 473 - -
Lja1g2269 476 MobiDBLite consensus disorder prediction 1 50 - -
Lja1g2269 476 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 1 473 - -
Lja1g2269 476 Coils Coil 425 445 - -
Lja1g2269 476 Gene3D - 227 277 - -
Lja1g2269 476 Pfam Myb-like DNA-binding domain 230 273 IPR001005 -
Lja1g2269 476 Pfam SWIRM-associated region 1 391 456 IPR032451 -
Lja1g2269 476 Gene3D - 62 146 IPR036388 -
Lja1g2269 476 SMART sant 228 276 IPR001005 -
Lja1g2269 476 CDD SANT 231 273 IPR001005 -
Lja1g2269 476 SUPERFAMILY Homeodomain-like 53 152 IPR009057 -
Lja1g2269 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 266 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g2269 Lja-Chr1 26455478 26458379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g2269 179 270 EF-hand Containing Proteins AT3G07740 33.333 1.39e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g2269 K11649 - gmx:100779777 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g2269 1 26455478 26458379 Lja1g2269 1 26455478 26458379 ECH