Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1795 ATGAAGAAGATGAGTAAGAGTAAGAGTGATAAAGCTGCTAGTGAAATGTTGAACACCAAGAGCCTTTGTTCAATGAGAGATCCTATGTGGGTTGCAGCTTACTTCTACAAGAAGCTCAAAAAAGCTCAAGTCGTGGACACTGACATTTCCTCTTGTATTGAAAAGATTTTGCAAGGTGAAATGGATGTTACATCCTATAGAGTGCTGGCCTATCTTGTTCTCGGTGTTGTGAGAATATACTCAAAAAAGGTTGAATATCTCTTGCATGACTGTAACAAGGTACTATCAAAATTCAAAGAATTTGTTATCGCCACCACTAAAAGGAATGCACATCCAGAAACCTTGCATACGTTTGTTACAATACCAGAAAGATTTGAGCTGGATGCTTTTGATCTGGACATACTTGAGGATGATGGCGGAGACCATATTGCTCCCAAGGAAAAAATTACTCTTAAAGAGGTTTTATCTAAAACTGAGAGATCTGTGCAGTTTTCGCACGACAAGTTTGAGGATTTTGATTCCGGTGGAAGCTCCTCTTCTGCTCATAATTCTTTGGTGGAACATTTTCATCGTCTGATGATGGGCATGGACTTCGAAGATTCCCCACCAGATAGTTCAATTAATTTAGTGGCAGGAGAAGAACAACTTGAGAATAGCTTATTTTCTCGAAAGGAACCAATGAACTTTGACTCAGTTTTAATTGTTGACGAAACAGAAAAAGAATCTATCAACTTGTCTGGTGAAGATCAACAAATGAATGAAGACCAAGAAGTTCAAGAAATTGTGAAATGTGTGGATGAAATAGTTCAAGAAATTGTGAAATGTGTGGATGGAATAAATAAAGAAAGAAGTAGAATATCTGAGGAGGAATCTACGGATATCAGTATGTTTTCTGAGCGAGAAAAGGAAACGGTATTATCCGTTGAAGCATTTAATGAATCTTGTGAAGTTGACGATGACCATATTATGGCCAGGGAAATGTCAAGCTCATCATGTCAAGTGCATCAGGAAATTACTCAAATTCATGAAGCAAGAAATTTTCAAGAGAGTATAGGAAGGTCTCAGGATGATATATCTTCTCAAGATGAATTTGTGGACCATGTTACGTCTTCTGTTGCGAAGGAGAGCCATGAAGAAGTCGTTGGAGGGTCTGTTGAAGAGCATGATAGAAAAGGCAAATTAGTGTTTCAAAAAAAGGTTTCATTTGAAGATCGAACACCTACTATTCCAGCGCAGTCAAAAACTCTTGATGTAACTCCTCAGTCTAAGTTTCAAGGTCATTCAGTTGGAATACCAAAACCAGGTACTACTACATCAGATTTCATGCCTATTCCTACACCAGCTGTAAGAGAGCCTGGTCTCCTTTCAAGGAAAAGAAAATCTGATAAAATGACAGTCCTGCCTAATGAGGAAACGTCAAGCTCATCATGCCAACTGCATCAGGAAATTACTCAAATTCATGAAGCAAGAAATTTTCAAGAAAGTATAGGAAGGCCTCAGGATAATATATCTTCCCAAAATGAATGTGTGGACCATATTGCGTTTTCTGTTGCCAAGGAGAGCCAGAAAGAAGTCGTTGGAGGGTCTACTAAAGAGCATGGTAAAGAAGGCAAAAAATGTTCTCAAAAAAATGTTTCATTTGAAGATGGAACACCTAGTTCTATTCCAGAACAGTCAAAAAATCTTGATGTAACTCCTCAGTCTAGGTTTCAAGGTCATTCAGTTGGAATACCAAAACCAGGTACTACTACATCAGATTTCATTCCTATTTCTAAACGAGCTGTAAGAAAGCCTGGTCACCTTTCAAGGAAAAGAAAACCTGTTATTGATAAAATGACAGTCCTGTCTGATAAGGTACTTAAAAGGAGCTTAATTGATACAAGTGACTTAATTTCTAATCGAAGACAATTTCGTCCTACTTTGCTTTCTAAGCGGAGAGAATCCCGCATTTCCAGTCTTCCTGATGGATTCAATGAGTCTTTTTTTCCTTGTTTCCTGCAGCAGCTTCAATCCCTTTTCTCTAAGAAAATGAAAATATCAGATTCCCTTGAAATTGTTGAACCTCCAGAGAGGTTAGATGTGTCAAAATCTCAAACTGTTGGCAGTCCAGAGCATATTGAAACTTCTCTACGAACCCCTCCTCAAGGCCTAGATCCACTAGTAACTAATGAAACTCCAGGGGCGCTAGATGTGTCAGGGTGTCAAACTTTTGACAATCCAGAACATATAGCAACTGCTCCACAAACCCCCCCTCCGTGCCAAAATATACAAGTTAGGTCAGTTGAGCTCCCAAGGAGAACTGAAATTCAATATTCAGATAACTTAGGACCTTCAAGTCCTCATGCAAACACAGAGAAAGAGCAACCTTCAAATCCTGATGCAAACACAGAGAGAGAGCAACCTCTGGAAGAGACTGAAGTGCCTGAGCTGGTGGAAAAGTTTAATATAGAATCTTCAGATTCCTATGAAAGTGTAGAGCAGGAGCAATGTTCAACAAAAGATGACGAACTTAATCTGATAAATGAGGAGATAAATTCATGTGAAACAGAGAATTCAAAATTGGAAGCTGGGTGGTCTGCGCGAACCAGGAAATTTGCAAGTCACTTGCATAGGGTGTTTCAAGATCAAGGGAAACAAAAAGAGGGGGATGATGTGAACTTTTCAGAAGTTGTAGGAGGACGGGATAGGAAAGAAAGCGCAAGGATGTTTTATGAACTACTGGTTTTGAAAACTACAAATTATGTGAATGTGAAGCAAGACAAAGCTTATGAAGATATTGCTGTCTCCAAACTCCCAAAATTTGATCAAACTTTTGGAGCTGATGGTAACTGA 2832 0.3888 MKKMSKSKSDKAASEMLNTKSLCSMRDPMWVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYLVLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILEDDGGDHIAPKEKITLKEVLSKTERSVQFSHDKFEDFDSGGSSSSAHNSLVEHFHRLMMGMDFEDSPPDSSINLVAGEEQLENSLFSRKEPMNFDSVLIVDETEKESINLSGEDQQMNEDQEVQEIVKCVDEIVQEIVKCVDGINKERSRISEEESTDISMFSEREKETVLSVEAFNESCEVDDDHIMAREMSSSSCQVHQEITQIHEARNFQESIGRSQDDISSQDEFVDHVTSSVAKESHEEVVGGSVEEHDRKGKLVFQKKVSFEDRTPTIPAQSKTLDVTPQSKFQGHSVGIPKPGTTTSDFMPIPTPAVREPGLLSRKRKSDKMTVLPNEETSSSSCQLHQEITQIHEARNFQESIGRPQDNISSQNECVDHIAFSVAKESQKEVVGGSTKEHGKEGKKCSQKNVSFEDGTPSSIPEQSKNLDVTPQSRFQGHSVGIPKPGTTTSDFIPISKRAVRKPGHLSRKRKPVIDKMTVLSDKVLKRSLIDTSDLISNRRQFRPTLLSKRRESRISSLPDGFNESFFPCFLQQLQSLFSKKMKISDSLEIVEPPERLDVSKSQTVGSPEHIETSLRTPPQGLDPLVTNETPGALDVSGCQTFDNPEHIATAPQTPPPCQNIQVRSVELPRRTEIQYSDNLGPSSPHANTEKEQPSNPDANTEREQPLEETEVPELVEKFNIESSDSYESVEQEQCSTKDDELNLINEEINSCETENSKLEAGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNYVNVKQDKAYEDIAVSKLPKFDQTFGADGN* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1795 943 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 478 940 - -
Lja1g1795 943 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 16 470 - -
Lja1g1795 943 Gene3D Structural maintenance of chromosome 1. Chain E 860 938 IPR023093 -
Lja1g1795 943 MobiDBLite consensus disorder prediction 525 543 - -
Lja1g1795 943 Pfam Conserved region of Rad21 / Rec8 like protein 881 934 IPR006909 -
Lja1g1795 943 SUPERFAMILY "Winged helix" DNA-binding domain 861 934 IPR036390 -
Lja1g1795 943 MobiDBLite consensus disorder prediction 791 807 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 420 443 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 520 560 - -
Lja1g1795 943 PANTHER SCC1 / RAD21 FAMILY MEMBER 478 940 IPR039781 GO:0007062|GO:0008278
Lja1g1795 943 PANTHER SCC1 / RAD21 FAMILY MEMBER 16 470 IPR039781 GO:0007062|GO:0008278
Lja1g1795 943 MobiDBLite consensus disorder prediction 694 730 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 420 478 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 544 560 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 771 790 - -
Lja1g1795 943 MobiDBLite consensus disorder prediction 771 807 - -
Lja1g1795 943 Pfam N terminus of Rad21 / Rec8 like protein 29 106 IPR006910 GO:0005515
Lja1g1795 943 MobiDBLite consensus disorder prediction 695 719 - -
Lja1g1795 943 Coils Coil 837 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1795 Lja-Chr1 20361037 20372458 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1795 K06670 - tcc:18592718 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1795 1 20361037 20372458 Lja1g1795 1 20361037 20372458 ECH