Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1787 ATGGTCATGGACAAACTAAGCCAATATGTTCACGTATTCAATCAGTTCGATGAAAATGGAGATGGCAAGATATCACCATCTGAGCTGCGGCAGTGTGTGAAGGCTATCGGCGAGGAGGAGCTATCCGAAGAGGATGCGGAGGCGGCGGAGGCGGCGGTGGCGGCTCTGGACACTGATGGGGATGGGCTGGTGGGATTAGATGATTTTGTGAGGTTTGTAGAGGGAGGGAAGGAAGAAGAGAAAGTGAATGACCTGAGGGAGGCTTTTAAGATGTATGAGATGGATGGAAGTGGTTGCATCACACCAAGGAGTCTTAAGAGGATGCTTAGCAAATTAGGTGATTCTACAAGTATCGACGAATGTAAAGTCATGATCTCTAGATTTGATCTTGACGGGGATGGGGTTCTTAGTTTTGATGAATTTAAGGTAATGATGTTGTGA 441 0.4671 MVMDKLSQYVHVFNQFDENGDGKISPSELRQCVKAIGEEELSEEDAEAAEAAVAALDTDGDGLVGLDDFVRFVEGGKEEEKVNDLREAFKMYEMDGSGCITPRSLKRMLSKLGDSTSIDECKVMISRFDLDGDGVLSFDEFKVMML* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1787 146 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Lja1g1787 146 Gene3D - 78 146 - -
Lja1g1787 146 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lja1g1787 146 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Lja1g1787 146 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lja1g1787 146 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 146 - -
Lja1g1787 146 Pfam EF-hand domain pair 11 73 IPR002048 GO:0005509
Lja1g1787 146 ProSiteProfiles EF-hand calcium-binding domain profile. 116 146 IPR002048 GO:0005509
Lja1g1787 146 SUPERFAMILY EF-hand 6 146 IPR011992 -
Lja1g1787 146 CDD EFh 84 145 IPR002048 GO:0005509
Lja1g1787 146 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 146 - -
Lja1g1787 146 Gene3D - 2 77 - -
Lja1g1787 146 Pfam EF-hand domain pair 97 145 IPR002048 GO:0005509
Lja1g1787 146 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lja1g1787 146 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Lja1g1787 146 SMART efh_1 84 112 IPR002048 GO:0005509
Lja1g1787 146 SMART efh_1 120 146 IPR002048 GO:0005509
Lja1g1787 146 SMART efh_1 8 36 IPR002048 GO:0005509
Lja1g1787 146 SMART efh_1 48 76 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1787 Lja-Chr1 20212764 20213634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1787 4 145 EF-hand Containing Proteins AT1G76650 50.704 7.88e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1787 K13448 - gmx:100784553 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1787 1 20212764 20213634 Lja1g1787 1 20212764 20213634 ECH