Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g1785 | ATGGGAGTGACACCCAAAATTGCTCCGTCGATGCTCTCATCGGACTTCGCCAATTTGGCTTCCGAGGCTCAACGCATGCTTGATTATGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCACTTTGTCCCCAATTTAACTATTGGCACTCCGGTCATTGAAAGTTTGAGAAAGCACACAAAGGCATATCTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTTGAGCCTTTGGGAAAAGCAGGTGCTTCTGGTTTTACATTTCATGTAGAGGCATCAAAAGATAACTGGAAAGAAGTTATCCAAAGAATTAAGTCACAGGGCATGAAGCCTGGTGTAGCATTAAAGCCTGGGACACCCATCGAAGATGTCTATCCTCTGGTTGAAGCTGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGCACCTGGATTTGGAGGACAAAAATTTATGCCTGAGATGATGGACAAGGTACGAATATTGAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGGCCTTCAACTATAGACATGGCCGCGTCTGCAGGGGCGAATTGCATAGTTGCTGGAAGTTCAGTGTTTGGAGCCCCTGAGCCAGCTCAAGTAATTTCCTTACTGAGGAATTCTGTTGAGAAAGGCCAGCAAACACATTAA | 681 | 0.4508 | MGVTPKIAPSMLSSDFANLASEAQRMLDYGADWLHMDIMDGHFVPNLTIGTPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEASKDNWKEVIQRIKSQGMKPGVALKPGTPIEDVYPLVEAENPVEMVLVMTVAPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIDMAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKGQQTH* | 227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g1785 | 226 | Pfam | Ribulose-phosphate 3 epimerase family | 6 | 203 | IPR000056 | GO:0005975|GO:0016857 | |
| Lja1g1785 | 226 | PANTHER | RIBULOSE-PHOSPHATE 3-EPIMERASE | 1 | 224 | - | - | |
| Lja1g1785 | 226 | Hamap | Ribulose-phosphate 3-epimerase [rpe]. | 4 | 218 | IPR026019 | GO:0004750|GO:0006098 | |
| Lja1g1785 | 226 | Gene3D | Aldolase class I | 1 | 226 | IPR013785 | - | |
| Lja1g1785 | 226 | SUPERFAMILY | Ribulose-phoshate binding barrel | 5 | 220 | IPR011060 | - | |
| Lja1g1785 | 226 | CDD | RPE | 6 | 216 | IPR000056 | GO:0005975|GO:0016857 | |
| Lja1g1785 | 226 | PANTHER | RIBULOSE-5-PHOSPHATE-3-EPIMERASE | 1 | 224 | IPR000056 | GO:0005975|GO:0016857 | |
| Lja1g1785 | 226 | TIGRFAM | rpe: ribulose-phosphate 3-epimerase | 6 | 216 | IPR026019 | GO:0004750|GO:0006098 | |
| Lja1g1785 | 226 | ProSitePatterns | Ribulose-phosphate 3-epimerase family signature 1. | 34 | 48 | IPR000056 | GO:0005975|GO:0016857 | |
| Lja1g1785 | 226 | PIRSF | RPE | 1 | 226 | IPR026019 | GO:0004750|GO:0006098 | |
| Lja1g1785 | 226 | ProSitePatterns | Ribulose-phosphate 3-epimerase family signature 2. | 140 | 162 | IPR000056 | GO:0005975|GO:0016857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g1785 | Lja-Chr1 | 20198619 | 20203562 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g1785 | K01783 | - | gmx:100500085 | 424.091 |
Event-related genes