Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1780 ATGACCTTCCGTCTAATCTCAGCTCCGCCGTCCTTCCCTCTCTTCACCTGCCACGCCACCTCCACCTCCACCTCCGCCACCACCACCGCCCGCCCCCTCCCTCCGCCTCCTCAAATCTCGCCGGCGACCCTAACTCCTATAACTCCACAGCCCCCGCCGCCAACGTGCGCACTCCACTGCTCCCACTTCCAATCGTGCTCGGGGTGCACGCACGAGTTCAACCTCCACCGTCCGGTTGTATTGGAAGAAGCTACCGAATTCTTTAATCGATACGGCGTCGAGGACTTCACATTTGATACTTGCAAATTGTGGGGTTGGAGGTGCCGTGCGAAATTGGCCGTGCGTGGCTCTTCAACCAACCCTCTCATCGGGCTCTATGAGGAGGGTACTCATAATGTAATTGACATTCCAGAATGCAAAGCTCATCATCCTAATATTAATGCAACCGTGGAGCTGCTTAGACGAGGTATTACTGAATTAGATATTGAGCCGTATCTTGAAGATGAAGGTACCGGTGATTTGCGTTATGTTCAGATGGCGGTGACAACATACAACACGTCTCTTCCTGCCCCAGAAAGATATAAAAATGGGAAGGTTCAGGTTACATTGGTTTGGAATTCAAGAAGCGAACAGTCACCTGGTGTAGACAAAATGAATGCATTAGCGAATTTTCTATGGAAAAATGGTGGGCCACGGAGCAGGCTTCATTTAATCCACTCTGTGTGGGCCAACTTTCAGACTTCTTCTAACAATATAATTTTTGGGAATAGATGGAGACATCTTATTGGAGAAAGAGACTTTTGGGAACATGTAGGTGGAATTGATGTGTCATTGGCCCCTTCTAGTTTTGGACAGGCAAATACACGGGCTTTTGATGCCCTGCTGCGAAAGTTACAGAAATATGTTCCACATGAATCATCTGTTGCTGATTTGTATGCTGGAGCTGGGGTTATTGGGTTATCATTAGCTGCCACAAGAAAGTGCAGATCCATCAAATGCATCGAGATTAATAAAGAGTCGAAGGCATCTTTTGAAAAGACTATTGCACGTTTGCCCTCCACAGTCAACAGCAGCATCAGTTGGCATCATGCTGATGCTTCGAAAGAGCCTCTTTTGTGGCTTGTGGGCTCAGATGTTGTTGTCATTGATCCTCCTAGAAAAGGACTAGATGTATCCCTTATTGATGCATTGAAGGATATATCATCAATCGAGCGTAAAGTCCTATCATCACCGGAACGCTCAAACTCAGTCCAGGAAGAGAAAAGACCATGGGTTTTACGTGCTAAAGAAGCTTCAGTCCATATTGGTAGCAAACCAGCTTTGGTTAATGACCCTCAATCAGTACCAAAAACCCTTATTTATATAAGTTGTGGATGGGAAAGTTTTAAAGAGGATTGCAAGTCATTGTTGTCTAGTAAGGCATGGCATTTGGAGAAAGCTCATGGTTTTAACTTCTTTCCCGGTACCCAAAGCATTGAAGTTCTAGCAGTGTTCAAGAGGGGCCCTCAGAAAAAGAAACCAGTAAAGAAAAAGAAAAAGCACTTGCAAGGAGCTGCTAGACATTAA 1566 0.4591 MTFRLISAPPSFPLFTCHATSTSTSATTTARPLPPPPQISPATLTPITPQPPPPTCALHCSHFQSCSGCTHEFNLHRPVVLEEATEFFNRYGVEDFTFDTCKLWGWRCRAKLAVRGSSTNPLIGLYEEGTHNVIDIPECKAHHPNINATVELLRRGITELDIEPYLEDEGTGDLRYVQMAVTTYNTSLPAPERYKNGKVQVTLVWNSRSEQSPGVDKMNALANFLWKNGGPRSRLHLIHSVWANFQTSSNNIIFGNRWRHLIGERDFWEHVGGIDVSLAPSSFGQANTRAFDALLRKLQKYVPHESSVADLYAGAGVIGLSLAATRKCRSIKCIEINKESKASFEKTIARLPSTVNSSISWHHADASKEPLLWLVGSDVVVIDPPRKGLDVSLIDALKDISSIERKVLSSPERSNSVQEEKRPWVLRAKEASVHIGSKPALVNDPQSVPKTLIYISCGWESFKEDCKSLLSSKAWHLEKAHGFNFFPGTQSIEVLAVFKRGPQKKKPVKKKKKHLQGAARH* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1780 521 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 64 501 IPR010280 GO:0006396|GO:0008173
Lja1g1780 521 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 58 500 IPR029063 -
Lja1g1780 521 Pfam Methyltransferase small domain 292 385 IPR007848 GO:0008168
Lja1g1780 521 Gene3D - 107 225 - -
Lja1g1780 521 PANTHER BNAA06G32370D PROTEIN 8 501 - -
Lja1g1780 521 CDD AdoMet_MTases 308 385 - -
Lja1g1780 521 Gene3D Vaccinia Virus protein VP39 266 500 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1780 - - gmx:100816889 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1780 1 20098101 20106534 Lja1g1780 1 20098101 20106534 ECH