Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1776 ATGGTTATGGCCAATAAAAAAGCATTACTTGTTTCAAACTTTGGTAGTGCCTTTGACTTTGGTTACTATAATTCACCAGCAGAGAAGATGAGAATTCTCGAATTGTCACCACCCTCCGACGGCAACGGTTCTTCAACTCATGATGAAGAACCTTTACCTCAGGATGCAGATTATATTGTTCCGAGTCTCAGCGACGAGCTAGAGACAATGATCTTGGCCAGGTTTCCAAGATCACAGCACTGGAAACTGTGCTTCCTAAACAAGCGGTTCTTGAATCTATTCAAGAGCGGCGAGATCTACAAAATCAGAAAGGAGTTAGGAATCAAAGAGCCCTCAGTGTTCATGTTAGCCAGTGGTGAGAGCAACTGGTGGGGAATGGACTGGCCTTTCAAGAAAAGTAGGAAGCTCCCTCCAATTCAATCAGATTACAGCTTTGAGTATGGAGATAAAGAATCATTCTCAGCAGGCTCACAACTCTTGGTTTCAGGCAAGGAGATTGATGGCGCGGTTATTTGGCGGTTTGACGCGGAAACAAACGAATGGTTTAAAGGACCATTCATGATCAACCCAAGGTGCCTTTTCGCGTCGGCTACCAGCGGTTCTATAGCCTTTGTTGCTGGCGGTCTTGACTCACAATCTTACAGCCAAGTCCTGGATTCTGCTGAGAAGTACAACTCTGAGACACAATCTTGGGAATTTCTCCCAAAGATGAATCAGAAGAGGAAATTTTGCTCTGGTTGTTTCATGGATAACAAATTCTATGTCATTGGTGGACAAGATGAGAATAATAAGGACCTCACTTGTGGAGAGTTTTATGATGGAAAAACAAACAGCTGGAGCCTAATTCCTGACATGTTGAAAGATATTCCTCCCTCAGTTTCGCAGTCACCGCCTCTCATCGCAGTCGCGAGTAACGAGCTTTACTCGCTTGATGCTTCTTCCAATGAGCTGAAAGTGTATCTCAAGGGAAGTAATACATGGAAGAAGCTCGGGGGGGTTCCGGTGCGGGCTGATGCTCAGGGAGGTTGGGGTGTGGCGTTCAAATCTCTTGGTGATGAGTTACTTGTTATTGGTGCGCCTTCTGTGTCTCACACAGAGCGTGCTCTGGCAATGTATACTTGCTGCCCTGATCCGACCGCTGAGAAACTGCGATGGAGGCAGATTGAATGTGGTAGCATTCAGCTTAATCACTTCATTCGCAATTGTGCTGTGATGGGAACTTGA 1224 0.4567 MVMANKKALLVSNFGSAFDFGYYNSPAEKMRILELSPPSDGNGSSTHDEEPLPQDADYIVPSLSDELETMILARFPRSQHWKLCFLNKRFLNLFKSGEIYKIRKELGIKEPSVFMLASGESNWWGMDWPFKKSRKLPPIQSDYSFEYGDKESFSAGSQLLVSGKEIDGAVIWRFDAETNEWFKGPFMINPRCLFASATSGSIAFVAGGLDSQSYSQVLDSAEKYNSETQSWEFLPKMNQKRKFCSGCFMDNKFYVIGGQDENNKDLTCGEFYDGKTNSWSLIPDMLKDIPPSVSQSPPLIAVASNELYSLDASSNELKVYLKGSNTWKKLGGVPVRADAQGGWGVAFKSLGDELLVIGAPSVSHTERALAMYTCCPDPTAEKLRWRQIECGSIQLNHFIRNCAVMGT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1776 407 MobiDBLite consensus disorder prediction 34 55 - -
Lja1g1776 407 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 3 406 - -
Lja1g1776 407 SUPERFAMILY Kelch motif 124 377 IPR015915 GO:0005515
Lja1g1776 407 SMART kelc_smart 252 298 IPR006652 GO:0005515
Lja1g1776 407 SMART kelc_smart 158 201 IPR006652 GO:0005515
Lja1g1776 407 SMART kelc_smart 202 251 IPR006652 GO:0005515
Lja1g1776 407 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 406 - -
Lja1g1776 407 Gene3D - 112 390 IPR015915 GO:0005515
Lja1g1776 407 Pfam Kelch motif 241 285 IPR006652 GO:0005515
Lja1g1776 407 Pfam Kelch motif 190 238 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1776 Lja-Chr1 20055567 20058794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1776 63 282 Miscellaneous Gene Families AT4G33900 24.123 7.49e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1776 - - aprc:113863834 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1776 1 20055567 20058794 Lja1g1776 1 20055567 20058794 ECH