Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1772 ATGGTCGTCACCGCCCGCTTCAACGACCACTTCGCCGCCAGCCGCTTATTCTCCTCCTTCGCCCTCTCCTCCTTCGGAGACCTCACCCACGCTTCCAGAATCTTCTCCTCCATTCACCAACCCAACACCTTCATGTGGAACACTCTCATCCGCGCTCAGCGCCACCCTCAAACCGCTCTCTCCCTTTACATCACCATGCGCAGGCACGGCGCTTTGCCCGGTAAACACACCTTCCCCTTTCTCCTCAAGGCCTGTTCTTCCCTCACGCCAGCTTTGCCTGTTCACAAACAGGTCCATGCCCATGTCCTGAAATTTGGGTTGGGGTTGGATTCCCATGTGGCTAATGGTTTGGTGCGGTGTTACTCCGTTTCGGGCGATTTAGTCGATGCCCGCTTTGTGTTTGATGAAATTCCGAGCAGAAGTTTAAGCCTTTGGACCACGATGGTTTGTGGGTATGCTCAGAATTTCTGCTCCAATGAGGCTCTGGCGCTTTTTGAGGGGATGGTGGCTGAGGGGTTTGAGCCGAATGGCGCGACGATTCATGAGTTTATGAGAGTGAAAGGGGTTGAAGTGGGAGTGATCCTCGGGTCAGCGTTGGTTAATATGTATGCGAAGAATGGGGCAATTGCGATGGCTCGGAAGTTGTTTGATGGAATGCCTGAGAGGAATGTTGTGACTTGGAATGGTATGATTTGTGGGCTGGCTACTCATGGACATGTTGAAGATGCTCTTAGTCTATTTGAGAATATGGAGAAGGAGGGGGTTGCTGTTCCGAATGATGTCACATTCATTGGGGTTTTATCGGCTTGTTGTCATGGTGGCTTGCTTGATGTTGGTCGCGATGTTTTTTGTTCAATGAAGACGGTGTATGGAATTGAACCAAAGATTGAGCATTATGGGTGCATGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGCTGGAGGCGAAGGAACTGATAAAAGGAATGCCATGGAAGCCTGATGTAGTTATTCTAGGAGCTTTGTTGGAAGCTAGCAAGAATATTGGAAATACTGAGGTTGCTAAAGTGGTGACGGAAGAAATTCTCGCTCTGGAACCTGATAATCATGGAGTTCATGTTTCTTTGTCAAATATGTATGCAGAGGCTGGAGAGTGGCAGGATGTTTTGAGACTGAGGAAGACTATGAAAGAAGAGAGACTCAAGAAAGTTCCGGGCTGGAGCCTTGTCACCACTTAA 1215 0.4914 MVVTARFNDHFAASRLFSSFALSSFGDLTHASRIFSSIHQPNTFMWNTLIRAQRHPQTALSLYITMRRHGALPGKHTFPFLLKACSSLTPALPVHKQVHAHVLKFGLGLDSHVANGLVRCYSVSGDLVDARFVFDEIPSRSLSLWTTMVCGYAQNFCSNEALALFEGMVAEGFEPNGATIHEFMRVKGVEVGVILGSALVNMYAKNGAIAMARKLFDGMPERNVVTWNGMICGLATHGHVEDALSLFENMEKEGVAVPNDVTFIGVLSACCHGGLLDVGRDVFCSMKTVYGIEPKIEHYGCMVDLLGRGGKLLEAKELIKGMPWKPDVVILGALLEASKNIGNTEVAKVVTEEILALEPDNHGVHVSLSNMYAEAGEWQDVLRLRKTMKEERLKKVPGWSLVTT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1772 404 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 403 - -
Lja1g1772 404 PANTHER OS11G0483950 PROTEIN 1 403 - -
Lja1g1772 404 Gene3D Tetratricopeptide repeat domain 92 181 IPR011990 GO:0005515
Lja1g1772 404 Gene3D Tetratricopeptide repeat domain 8 91 IPR011990 GO:0005515
Lja1g1772 404 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Lja1g1772 404 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Lja1g1772 404 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Lja1g1772 404 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Lja1g1772 404 TIGRFAM PPR: pentatricopeptide repeat domain 225 256 IPR002885 -
Lja1g1772 404 Pfam E motif 343 402 IPR046848 -
Lja1g1772 404 Gene3D Tetratricopeptide repeat domain 182 256 IPR011990 GO:0005515
Lja1g1772 404 Gene3D Tetratricopeptide repeat domain 257 400 IPR011990 GO:0005515
Lja1g1772 404 Pfam PPR repeat family 222 272 IPR002885 -
Lja1g1772 404 Pfam PPR repeat 115 140 IPR002885 -
Lja1g1772 404 Pfam PPR repeat 144 173 IPR002885 -
Lja1g1772 404 Pfam PPR repeat 298 323 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1772 Lja-Chr1 20025067 20026774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1772 23 402 Glycoside Hydrolase AT3G49170 32.921 3.34e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1772 - - mtr:MTR_7g033400 634.024