Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1713 ATGCCTGATTCCAAAGGTTCCTCCATGGTGAACACAACCCAAAGTACCTCAACCTCACAACATAGTACTTTCCTCATGGTTCAGAACATCCTTAGAATCCTAGCCATTGTGCTCTTAGCAGCTTCAATTGCAGTCATGGTCACCAACAACCAAACCGTTTCAATCTTCTCTATCCGGTTGGAAGCTCACTTCTATTACTCAACATCCCTCAAATTTCTTGTTGCTGCAAATGGAGTGGTCTGTATCATGTCTGTGCTGACATTGATGATAGTGAACTATCTGCTGAGACAACAAGCACCACAACAAAAAGTTTATCATTATTTCTTCCTATTTGTTCATGATATGGTGATGACACTGTTATTGATGGCTGGATGTGCAGCTGCAACGGCAATTGGATACGTGGGACAATATGGAGAGCAGCATATGGGTTGGCTTCCAATGTGTGACCATGTGCGCAAGTTCTGCAAAACAAACTTGGTTTCATTGTTGCTTTCTTATTTGGCCTTCTTTGCCTATTTAGGACTCACCATTTTGACGGTGCACAGGTCCATCTCATTTTCTCCTAAGAAAATTAATCAGATGGATCATCATGATGACCCACAGGCTTTATAA 612 0.4183 MPDSKGSSMVNTTQSTSTSQHSTFLMVQNILRILAIVLLAASIAVMVTNNQTVSIFSIRLEAHFYYSTSLKFLVAANGVVCIMSVLTLMIVNYLLRQQAPQQKVYHYFFLFVHDMVMTLLLMAGCAAATAIGYVGQYGEQHMGWLPMCDHVRKFCKTNLVSLLLSYLAFFAYLGLTILTVHRSISFSPKKINQMDHHDDPQAL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1713 203 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 30 182 IPR006459 -
Lja1g1713 203 Pfam Casparian strip membrane protein domain 26 171 IPR006702 -
Lja1g1713 203 PANTHER CASP-LIKE PROTEIN 1F1 11 184 - -
Lja1g1713 203 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 11 184 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1713 - - gmx:102659722 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1713 1 18920320 18921805 Lja1g1713 1 18920320 18921805 ECH