Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1712 ATGGGGTGCTCTTACTCTGCATACAGGAAGAAGAAATCAAGCTTTCCTGAAGTTGTGGTCTTAGTTCCATCAACCAGAATTCCAGTGCAATCTGATCTTCAAAGAGCACTTAAAGGATTAGTTCCAAAGGACCTTGCTGATAAATTATCTTCGCTTCGGAACCAGATAGTGTTGGTAGCAGAAGATACTGACGGATCACCTATACCTGAATTGAGGCGAGCTTTGAATGAATACTTATCGGTTCTGATTGGACTCACTAAGAAAGAGTATGGTCTTGATGGATTAATAGAATTCAAGTGGAAAAATTTCAATGATGGAAGACAAGATAGCAATATAGCAAATGTCTGGTTTGAAGTGCTATCTGCTGTTCATTTTATGGCTATGCTAGCACTTTCAGAGGCTGATTCACTGATGATTCCAAAGGATCATTCAGGCTCTGGATTCAGGGTTGTATCTTCAGATAACAAGAGGGAAGCAATTGATTTGCTACTCAAGGCATCAGGATACCTGGAGTTCTGTCTCAGGCATATTCTTACTCGGATGCCCGCCGAAACCAAGAAAATTTTACCCCAAGATTTGCAGCAAGGTGTTTTGGAGGCTATAGCTATTCAAGCACTGGGCCAGGGAACTGAGATTCAGCTTGGTCTTGCTGTTGAAAGTCAGAAGGCAAGTTTGTCTGTCAAGAGAAGGTTGGCATGTGAACAGCTGATATACTTCAGTCAGGCTTTTCACTGCTTGACTGGATGTGAGTCATGTGACTTGAACCAAGGGCATGCAAAGAAACATCTCAGGTTCATCAAATGGAAATTCCTTGAAACCAAGGCTGCAGCTTACTACTACCATGGTCTGATCCTTGACAAAGGTAATGAACCAAGTGGTCACATCAGCGCAGTGTCTTGTTTTCTTGCTGCAGAAGAACTGCTAGCTGAAAGCAAGAAGGCCTGTTTGAGCTTTTGCCTTGCAGCTCCTGTGACAAGGGCTCCTCCACTATGGGGTGCTATGAAGCATTTAAATCAGAAAATTCCTGAAGTTGCATCAAGGAAGTCTCAGATGTATGGCTACCTCTTGGAGCAAGAAAAGGGTCTTCAAGCATTGCCAGACCTACCAGAGTTCCAATTGTCATTACGTCCAGATGATTATGAACTTCCTGAGATTGATCCAGCATGGGATAGTAATCATTGGGAAACTCTAGGACAACCATTGAAGGAGCACCTTAGAGATAGTGATGAGAATGCAGCTGATTGA 1245 0.4297 MGCSYSAYRKKKSSFPEVVVLVPSTRIPVQSDLQRALKGLVPKDLADKLSSLRNQIVLVAEDTDGSPIPELRRALNEYLSVLIGLTKKEYGLDGLIEFKWKNFNDGRQDSNIANVWFEVLSAVHFMAMLALSEADSLMIPKDHSGSGFRVVSSDNKREAIDLLLKASGYLEFCLRHILTRMPAETKKILPQDLQQGVLEAIAIQALGQGTEIQLGLAVESQKASLSVKRRLACEQLIYFSQAFHCLTGCESCDLNQGHAKKHLRFIKWKFLETKAAAYYYHGLILDKGNEPSGHISAVSCFLAAEELLAESKKACLSFCLAAPVTRAPPLWGAMKHLNQKIPEVASRKSQMYGYLLEQEKGLQALPDLPEFQLSLRPDDYELPEIDPAWDSNHWETLGQPLKEHLRDSDENAAD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1712 414 Gene3D alix/aip1 like domains 31 398 IPR038499 -
Lja1g1712 414 PANTHER ENDOSOMAL TARGETING BRO1-LIKE DOMAIN-CONTAINING PROTEIN 1 411 - -
Lja1g1712 414 SMART BRO1_2 19 385 IPR004328 -
Lja1g1712 414 ProSiteProfiles BRO1 domain profile. 4 414 IPR004328 -
Lja1g1712 414 PANTHER UNCHARACTERIZED 1 411 IPR038898 -
Lja1g1712 414 Pfam BRO1-like domain 47 312 IPR004328 -
Lja1g1712 414 CDD BRO1_Alix_like 11 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1712 Lja-Chr1 18906730 18910183 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1712 - - gmx:100803541 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1712 1 18906730 18910183 Lja1g1712 1 18906730 18910183 ECH