Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1703 ATGATGAATTATTTCCCCGATGAGGTAATAGAGCATGTGTTTGATTATGTGGTGTCACACCGTGACAGAAATGCGTTGTCTTTGGTGTGTAAAAGCTGGTATAGAATTGAGAAATCTACCAGGAAGAGGGTGTTTATAGGGAACTGTTACTCTATTAGTCCTGAGAGATTGATTCAGAGGTTTCCTTCTCTAAGGTCTTTGACTTTGAAGGGGAAGCCTCATTTTGCTGACTTTAGTTTGGTTCCTCTTGATTGGGGTGGTTTTGTGTATCCATGGATTGAGGCCTTGGCCAAGAACAAGGTTGGATTAGAGGAGCTTAGGTTGAAGAGGATGGTGGTGTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTTGTGAATTTTAAGTCGCTTGTTCTTGTTAGCTGTGAAGGGTTCACTACTGATGGCCTTGCTGCTGTTGCTGCCAATTGCAGGTTTCTTAGGGAGCTGGACCTGCAAGAAAACGAAGTTGAAGACCAAAAAGGCCAGTGGCTTAGTTGCTTTCCTGATAGCTGTACATCACTTGTCTCTCTCAATTTTGCTTGCCTTAAGGGAGATGTTAACTTGGGAGCTCTTGAGAGGCTTGTGGCGAGATCTCCAAACCTTAAGAGCTTAAGGTTAAACCGATCTGTGCCCATTGAGGCACTCCAAAGGATATTGATGCAAGCGCCCCAACTAGCTGATTTGGGTATTGGATCATTTGTCCATAATCCTTTTTCAGACGCCTTCTCAAAGCTAAAGAATACCATTCTTAAGAGCAAGTCAATTACCAGTTTGTCAGGATTTCTGGAAGTTGGTCCTTTCTGCCTTCCAGCTATGTATCCAATTTGCCGGAATTTAACAGCCTTGAACTTGAGCTACGCAGCAGGCATTCACGGCAATGAGCTAATCAAACTGATTTACCATTGTGGGAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTGGGTATTGTGGCTAGTACATGTAAAGAATTGCAAGAATTGAGGGTTTTCCCATCTGCTCCCTTTGGAAATCCTGCAGCTGTCACTGAAAAAGGACTGGTTGCAATATCAGCAGGTTGCCGCAAGCTTCACTCGCTTCTCTACTTCTGCCACCAGATGACAAACGCTGCCCTCATAACGGTGGCCAAGAACTGCCCGAATTTCATCCGCTTCAGGTTGTGCATCCTTGACGCAACAAAGCCTGACCCCGATACAATGCAGCCGCTGGATGAAGGTTTCGGTGCTATTGTGCAGTCTTGCAAGCGGCTGAGGCGGCTATCACTCTCTGGCCAGTTGACCGACCAGGTGTTCCTCTACATTGGCATGTACGCTGAGCAGCTTGAGATGTTGTCCATTGCGTTTGCCGGGGAGAGTGACAAGGGAATGCAGTATGTGTTGAACGGATGCAAGAAGCTTCGGAAACTCGAGATTAGGGACTGCCCTTTCGGCAACATGGCACTTCTGGCGGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCATCCTGTGAAGTGACTGTGGGAGCATGCAAGGAACTCGCGGAGAAGATGCCGAGGTTGAATGTGGAGATCTTCAATGAGAATGAGCAAGAAGAGTGTAGTCTGGAAGATGAGCAGAGTGTAGAGAAGATGTATTTGTACCGTACATTGGCTGGGAAGAGGAATGATGCACCAGAATATGTATGTACTTTGTAG 1719 0.4619 MMNYFPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIEKSTRKRVFIGNCYSISPERLIQRFPSLRSLTLKGKPHFADFSLVPLDWGGFVYPWIEALAKNKVGLEELRLKRMVVSDESLELLSRSFVNFKSLVLVSCEGFTTDGLAAVAANCRFLRELDLQENEVEDQKGQWLSCFPDSCTSLVSLNFACLKGDVNLGALERLVARSPNLKSLRLNRSVPIEALQRILMQAPQLADLGIGSFVHNPFSDAFSKLKNTILKSKSITSLSGFLEVGPFCLPAMYPICRNLTALNLSYAAGIHGNELIKLIYHCGKLQRLWIMDCIGDKGLGIVASTCKELQELRVFPSAPFGNPAAVTEKGLVAISAGCRKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMQYVLNGCKKLRKLEIRDCPFGNMALLADIGKYETMRSLWMSSCEVTVGACKELAEKMPRLNVEIFNENEQEECSLEDEQSVEKMYLYRTLAGKRNDAPEYVCTL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1703 572 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Lja1g1703 572 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Lja1g1703 572 SMART fbox_2 5 46 IPR001810 GO:0005515
Lja1g1703 572 SMART LRR_CC_2 366 390 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 426 449 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 475 500 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 310 333 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 100 124 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 284 309 IPR006553 -
Lja1g1703 572 SMART LRR_CC_2 125 150 IPR006553 -
Lja1g1703 572 Gene3D - 1 41 - -
Lja1g1703 572 Pfam F-box 3 43 IPR041567 -
Lja1g1703 572 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 570 - -
Lja1g1703 572 PANTHER PROTEIN AUXIN SIGNALING F-BOX 3 3 570 - -
Lja1g1703 572 SUPERFAMILY RNI-like 359 512 - -
Lja1g1703 572 SUPERFAMILY RNI-like 17 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1703 Lja-Chr1 18785374 18788241 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1703 - - gmx:100812516 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1703 1 18785374 18788241 Lja1g1703 1 18785374 18788241 ECH