Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1660 ATGGTGAAGGCAGGCTGGCCAACTGCAGATGTTCCTGATCTTACACTGAAGAGTTCCAATAAATCTCTGCATGATTCTATTATTCGTATAAGGAAGCTACTTCAGAAGCAACTTTTAGGTTCAGAGTACATGGTGACTGCAGGCTTGATATATGTAAGTGAACAATTAGATGATTGGAAAGTGGAGTGCCTGAACATTCTCCGGAACAAATTTAATAGAGATACTCGAACTTTTGCTCCGGAATCAGAGATATTGGAGGCTTTGGAACATAGGGGTCACTCTTGTCAGCAATGTAGGCCTTTCTTGAATTATATGAAGGGTAAAGCCAATGAACACGGGGCTGAGGTGCTGGATTTGAGATTCAGTGAAATGGAGGTTCTTAAACAAAACTTGGACTTGATAAAGAGACAGTTAGCTCTAGAACATGTGGAAATCTTATCTGCAGCTGATGCCGATTCTGTGGCTAAAGCTGGAGATTTAGCTAATGATGATGAAAAGTTGATGGCTTTGATTGGGATGAAGGAAGCAGGGTATGTTCCTGATACAAGATTTGTTCTTCATGACATTGATCAGGAAGCAAAGGAGCAGGCTTTGCTCTACCACAGTGAACGTCTAGCTATTGCCTATGGCCTCATTAGTACTCCACCAAGAACACCTCTTAGAATCATTAAGAACCTTCGTGTCTGTGGTGACCAGCAACCTCCTTTGCAGAAAAAAAATGCATATTCAGAGGAACAGGAATCAGGGAAGACAGAGGAACACTCTTTGACAGAGGTAACACATCACTTCTTGTCAAAGCCACTTTCACACTCCAACGTCTCAATTCTCTCTCCACCACCACCACCACCACCACCAGTGTCTACCACCACCACCACCGTAGAAGAAAAGCAAAAAAGCAAAATGTGTGATCAGGAAGTGAACCAGCCTCTCTCACCTTCACGATCACCATCAAATCCTCCTCAATTTCAACTTCACCCAAGCACCCCGGAGAAATTTCCCAACCCAAACATTCAGAAACGAATGCAAGGAGACACTTGCTTCAAGTGTCACCAACAAGGTCATTGGAGTTGGTTTTGCCCTTTGAACTCTCCCAACAAGAACCCCCTCTCATCATCATCATCATCACACTCACCCACTCTCCACTCCCCTCAGAACATTCACTGCCGTTGTGGCTACGGTTTGTGCATCATCAAAACCTCCAAGAGCGAGAGAAACCCGGGGAGAAAGTACTATGCCTGCCCCGTCAAAAGGGGGGCACAGTGCAATGGATACGGGTTTATGAAATGGTGTGATGAGCCTGTTGATCAGAGTGATTGGCAGCCTCCGTTGTTCAAGTACCCTGAGTGTGAATGCGGAGCTGGAGTGTGTCGAAGAGTGAAGGGAACACAAGAGAGCACCAGTGTGGTTAAGTACTATTTTGAGTGCCCTGTGAAAAAGGATCATGGATATTGTGGATACCAAGTGTCAGAAGATGAAGTGCTCAACAACACAAGCATTGCTCCTATCCCACAAAGCATGTCTGAAGAGGAAGTGCTCAACAACTCAAGCATTACTCCTACCCGGAAAAGCAGGCAAAGGTGTCTCGATGACTTTTACCAAAATGATAAAAGTCATAAAACTGAGAATGACCTGGGTGATGGCTTGTGTGAGGGAGGTAATTTCCTTGGACAGACCAAAAGGATGAGAATCATGGACAATTATGAATTTCTCTCATCCTTGGTTATATCTGAAATTCCAGAAGGTGAAGATGCTGGTGCAGTAGCGGAAGTAGACCAATCAAAAGTTGCTGGTTTTCCAGAATTTGAGATTGCTGATGATGATTTAGAATTTGCCGACTTAGCCATTCAGGCAGAAGCTGATCTATTACCTAGTCTGTCAACACCTTCAAGGATCAGTGCTCGACAATATGTTTTTGTTAGGGACATTGTTGATGCATCACTTGATGGTTTTCTAATGGGTTGGTTAGGCCGCCTTGTCTTTGTCCATCCCACAAAGGGCTTGAAGCTTCCCACACCACAGCCATTTTTCTGCTGTGTTTTCCCATCTTTTAATCCTATACTTGTTCCTAAACAAGCAAGTATTATTCTTAATGGTCCTAGTGCTCAACATACTCAACTTTCAACTACTAGTCTTACTGAGGTATCCAGAGATGTAGTTAGTCCCAATTCACCACCAGGCAGTGGAAACAAGCCAATGACAATGTCAAAGAGGCAAAGAGAAGTTGCCTTGTTTATGCAGCAGCAGCTACTGAGTGATCTAGAGAATCTGGATCCTCGCGAGCAGGACTCTATGAGAGAGGCAGCAGAGACCACTTTCACATTGTTAAATCGTTTAGAAGTTGACTGTGAGCAATTTTCTCAGCATGTGTGGGATTTCATCAATCTCACATCATCCATAGTAGAAATGGATAAGTCTATGGAAAATTCACTTACTCTCGAGGAACACCAAAAACTCTTTGAGGAGGAGGAAATTAAATTGGATTGCATCAAGGATGACCTTGCTGAGACTGAGGCTTTGCTTGAAGTATCAAACCGACATAGAAAAACTCTTTGTGAAGAGATCTCTCATCTTGAGGCCATGCTCCTTAAGAAGAAAAACCAATTAGAATCTTGTGAGGTGGAGACATTGCAAATGGAGACTCAGCTTGGTGATTTGAAAAGAAGTATGTTGAAAGCTGACATAACTTTGAGGGATAGAGCTGAACAAGTAGAAGTAGCCCGCAAACAAAGTGAAGAAAGAAAAGCAAAGCAGGTTGCAGCTAAGACAGCACTGGAGAATGCAAAACTTGAATTGGAGAATTGA 2802 0.4333 MVKAGWPTADVPDLTLKSSNKSLHDSIIRIRKLLQKQLLGSEYMVTAGLIYVSEQLDDWKVECLNILRNKFNRDTRTFAPESEILEALEHRGHSCQQCRPFLNYMKGKANEHGAEVLDLRFSEMEVLKQNLDLIKRQLALEHVEILSAADADSVAKAGDLANDDEKLMALIGMKEAGYVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDQQPPLQKKNAYSEEQESGKTEEHSLTEVTHHFLSKPLSHSNVSILSPPPPPPPPVSTTTTTVEEKQKSKMCDQEVNQPLSPSRSPSNPPQFQLHPSTPEKFPNPNIQKRMQGDTCFKCHQQGHWSWFCPLNSPNKNPLSSSSSSHSPTLHSPQNIHCRCGYGLCIIKTSKSERNPGRKYYACPVKRGAQCNGYGFMKWCDEPVDQSDWQPPLFKYPECECGAGVCRRVKGTQESTSVVKYYFECPVKKDHGYCGYQVSEDEVLNNTSIAPIPQSMSEEEVLNNSSITPTRKSRQRCLDDFYQNDKSHKTENDLGDGLCEGGNFLGQTKRMRIMDNYEFLSSLVISEIPEGEDAGAVAEVDQSKVAGFPEFEIADDDLEFADLAIQAEADLLPSLSTPSRISARQYVFVRDIVDASLDGFLMGWLGRLVFVHPTKGLKLPTPQPFFCCVFPSFNPILVPKQASIILNGPSAQHTQLSTTSLTEVSRDVVSPNSPPGSGNKPMTMSKRQREVALFMQQQLLSDLENLDPREQDSMREAAETTFTLLNRLEVDCEQFSQHVWDFINLTSSIVEMDKSMENSLTLEEHQKLFEEEEIKLDCIKDDLAETEALLEVSNRHRKTLCEEISHLEAMLLKKKNQLESCEVETLQMETQLGDLKRSMLKADITLRDRAEQVEVARKQSEERKAKQVAAKTALENAKLELEN* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1660 933 MobiDBLite consensus disorder prediction 274 288 - -
Lja1g1660 933 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 309 933 - -
Lja1g1660 933 Coils Coil 812 839 - -
Lja1g1660 933 Coils Coil 854 874 - -
Lja1g1660 933 MobiDBLite consensus disorder prediction 233 256 - -
Lja1g1660 933 PANTHER OS07G0190500 PROTEIN 309 933 - -
Lja1g1660 933 MobiDBLite consensus disorder prediction 303 337 - -
Lja1g1660 933 Gene3D - 329 373 - -
Lja1g1660 933 MobiDBLite consensus disorder prediction 711 733 - -
Lja1g1660 933 Pfam DYW family of nucleic acid deaminases 177 232 IPR032867 GO:0008270
Lja1g1660 933 MobiDBLite consensus disorder prediction 269 337 - -
Lja1g1660 933 Pfam GRF zinc finger 387 432 IPR010666 GO:0008270
Lja1g1660 933 SUPERFAMILY Retrovirus zinc finger-like domains 330 365 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1660 Lja-Chr1 18232379 18237635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1660 173 231 Acyl Lipid Metabolism Gene Families AT1G47580 67.797 1.66e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1660 - - gmx:100802558 514.998