Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1659 ATGGGGTTGACGGCGAAGAAGGAGAAGGAGAAGGGGTGTTGCAACCCGGTGAAGAAAGCGGGGCCGGTGACGATGGATCATGTGTTGTTGGCATCGCAGGAGACGAAGGAGGAGAGGGAGATCAGGATTCAAGGAATTTTCGGTTTCTTCGATAAGGAGAATCGTGGGTATTTGGAGTATGAGCATATTGAGGTTGGTCTCTCTGCTCTTCAGATTCCGGCTGAGTATAAGTACGCTTCGGATTTGTTGAATGCTTGTGACAGGAACAAGGATGGGCGTGTTGATTATGTGGAGTTCAAGAGGTATATGGATGATAAGGAGTTGGAGCTTTACCGCATTTTCCAGGCCATTGATGTTGAGCATAATGGCTGCATTGTGCCTGAGGAGCTCTGGGAGGCACTTGTAAGAGCAGGGATTAAGATTGATGACGAGGAACTCGCTCGTTTTGTTGAGCGTGTTGATAAGGATAATAATGGTGTGATAACATTCGAGGAATGGAGGGATTTTCTGCTGCTTTATCCTCACGAAGCAACCATTGAGAACATTTACCATTATTTGGAGCGGTTATGCATAGTAGATATCGGGGAACAAACTGTTATTCCTGCTGGTGTTGCTAAACACGTTCATGCAAGCAGGTATTTAATCGCAGGAGGAGTCGCAGGTGCAGCGTCACGCACAGCAACTGCACCCCTTGATCGTTTAAAGGTTAAATTGCAAGTCCAAACGACACGAGCTCAAATAATGCCTGCAGTAAAAAATATATGGAAAGAAGGTGGCTTCTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTATGAAGGTGGCCCCAGAAAGTGCCATTAAATTTTATACCTATGAGATGCTGAAGACTTTTATTGTGAATGCTAAAGGAGAAGAGGCAAAGGCTGATGTTGGAGCTATGGGGAGACTGCTAGCCGGTGGTTCAGCTGGTGCTATAGCTCAAACTGCAATATATCCAATGGATCTTGTCAAAACACGACTACAAACTCATGCATGTACTAGTGGAAGAGTACCTAGTCTTGGAACCCTTTCAAAAGATATATGGGTTCATGAAGGACCCCGGGCTTTTTATAGGGGACTGATTCCTTCTCTTCTTGGGATTATTCCATATGCTGGCATAGATCTTGCTGCATATGAAACCTTCAAGGATATGTCAAAAAAGTATATGCTTCATGATGAAGAACCTGGCCCTGTAGTACAGTTAGGATGTGGGACAGTATCAGGAGCTCTTGGAGCAACATGTGTTTATCCATTACAGGTCATTAGAACAAGGCTCAGCGCTCTACTAATGGAATGGCTGACGTATTCAGGAAAACCTTGGAAAATGAAGGATTCAGGGGGTTCTACAAAGGAATATTTCCTAACATGCTCAAAGTAG 1398 0.4435 MGLTAKKEKEKGCCNPVKKAGPVTMDHVLLASQETKEEREIRIQGIFGFFDKENRGYLEYEHIEVGLSALQIPAEYKYASDLLNACDRNKDGRVDYVEFKRYMDDKELELYRIFQAIDVEHNGCIVPEELWEALVRAGIKIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERLCIVDIGEQTVIPAGVAKHVHASRYLIAGGVAGAASRTATAPLDRLKVKLQVQTTRAQIMPAVKNIWKEGGFLGFFRGNGLNVMKVAPESAIKFYTYEMLKTFIVNAKGEEAKADVGAMGRLLAGGSAGAIAQTAIYPMDLVKTRLQTHACTSGRVPSLGTLSKDIWVHEGPRAFYRGLIPSLLGIIPYAGIDLAAYETFKDMSKKYMLHDEEPGPVVQLGCGTVSGALGATCVYPLQVIRTRLSALLMEWLTYSGKPWKMKDSGGSTKEYFLTCSK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1659 465 Pfam Mitochondrial carrier protein 304 394 IPR018108 -
Lja1g1659 465 Pfam Mitochondrial carrier protein 208 294 IPR018108 -
Lja1g1659 465 Pfam Mitochondrial carrier protein 403 443 IPR018108 -
Lja1g1659 465 Gene3D - 121 196 - -
Lja1g1659 465 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lja1g1659 465 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Lja1g1659 465 Pfam EF-hand domain pair 109 168 IPR002048 GO:0005509
Lja1g1659 465 PANTHER SOLUTE CARRIER FAMILY 25 53 434 - -
Lja1g1659 465 SUPERFAMILY Mitochondrial carrier 207 437 IPR023395 -
Lja1g1659 465 SUPERFAMILY EF-hand 33 183 IPR011992 -
Lja1g1659 465 Gene3D Mitochondrial carrier domain 204 459 IPR023395 -
Lja1g1659 465 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 291 IPR018108 -
Lja1g1659 465 CDD EFh 109 170 IPR002048 GO:0005509
Lja1g1659 465 Pfam EF-hand domain pair 79 105 IPR002048 GO:0005509
Lja1g1659 465 Gene3D - 5 110 - -
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 226 240 IPR002067 GO:0055085
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 266 286 IPR002067 GO:0055085
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 319 337 IPR002067 GO:0055085
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 364 382 IPR002067 GO:0055085
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 213 226 IPR002067 GO:0055085
Lja1g1659 465 PRINTS Mitochondrial carrier protein signature 411 433 IPR002067 GO:0055085
Lja1g1659 465 SMART efh_1 42 70 IPR002048 GO:0005509
Lja1g1659 465 SMART efh_1 109 137 IPR002048 GO:0005509
Lja1g1659 465 SMART efh_1 145 173 IPR002048 GO:0005509
Lja1g1659 465 SMART efh_1 78 106 IPR002048 GO:0005509
Lja1g1659 465 ProSiteProfiles Solute carrier (Solcar) repeat profile. 304 391 IPR018108 -
Lja1g1659 465 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 53 434 - -
Lja1g1659 465 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Lja1g1659 465 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1659 Lja-Chr1 18215208 18218479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1659 3 434 EF-hand Containing Proteins AT5G51050 71.594 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1659 K14684 - gmx:100775805 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1659 1 18215208 18218479 Lja1g1659 1 18215208 18218479 ECH