Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1654 ATGTCGTCTGTGCTGAAGAGAACGGGGCGACAAAGACAGCGTTATGAAGACAACATGCGTCTTGTTTCTGGATGTATTCCCTACAGATGGAGAAAAGACAACACAGATCAAATGGGAGAAGCTGAGGAAATATTAGAAGTACTTATGGTTTCTTCACCGAAACGTGATGATCTTGTATTTCCAAAGGGTGGATGGGAGGATGATGAGACTGTTTTAGAAGCTGCTTGCCGCGAAGCTTTAGAAGAAGCAGGAGTTAAAGGAATTCTAAGAGAAATTCCATTAGGAAAGTGGGAGTTCAGAAGCAAAAGCAGTCAGGACGACTTATGTGGCATGGAAGGAGGCTGCAGAGGATACATGTTTGCCTTGGAGGTGACTGAAGAACTTGAAACTTGGCCCGAGCAGAAAAACCGCGCTCGCCAATGGTTATGCGTAAAAGAGGCTTTTAGACTCAGTCGGTATGACTGGATGTGTAACGCACTGGAGGAGTTTATGAGGGTTATGGAAGAGGTGGAAGAGGAAACAAAGCTTGAGACACAAGACAAGAATGTTGAAGCAGAAGATGTGTCAGAATGTCAAAGTAAGTCACCCAAATGCTATAAAAGATCCTCAACTATGCAGCACCATGGTATGCTGCAACATGCTTCTCAGGAGATAGCCATCCACTTTGGTTATTGA 675 0.443 MSSVLKRTGRQRQRYEDNMRLVSGCIPYRWRKDNTDQMGEAEEILEVLMVSSPKRDDLVFPKGGWEDDETVLEAACREALEEAGVKGILREIPLGKWEFRSKSSQDDLCGMEGGCRGYMFALEVTEELETWPEQKNRARQWLCVKEAFRLSRYDWMCNALEEFMRVMEEVEEETKLETQDKNVEAEDVSECQSKSPKCYKRSSTMQHHGMLQHASQEIAIHFGY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1654 224 Coils Coil 160 180 - -
Lja1g1654 224 SUPERFAMILY Nudix 9 165 IPR015797 -
Lja1g1654 224 ProSitePatterns Nudix box signature. 63 84 IPR020084 GO:0016787
Lja1g1654 224 CDD Nudix_Hydrolase_9 21 156 - -
Lja1g1654 224 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 167 - -
Lja1g1654 224 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 190 - -
Lja1g1654 224 ProSiteProfiles Nudix hydrolase domain profile. 18 164 IPR000086 -
Lja1g1654 224 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 1 190 - -
Lja1g1654 224 Pfam NUDIX domain 47 155 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1654 Lja-Chr1 18147683 18152761 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1654 K07766 - gmx:100794003 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1654 1 18147683 18152761 Lja1g1654 1 18147683 18152761 ECH