Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1652 ATGGCCTCTCTCCTTCCATGCCCACAACAAATTCCCACCACACCCTTCATCTCCAAGCTCAGTTCTTCCCCAAAACCATGGAAGCTCTTCATCCTCAGCTACCCTTTACACCAAAAAACCATCAAAAGACTAACACTACCCTCCCCCACCAAAGCAGTCTACACACAAGGCCTCTATGTCTCTGCTCCCCCACCTTCCAAAACTGACCTTGACAACGACCCTATCTCCCTCCTCAACGAGAGGATTCGCCGCGACCACGGCAAAAGAGAGGTTTCCAGGACTGTGATGGACAAGAAGGAAGCTGAGAAGTACATACAGTTGGTGAAGGAGCAGCAGCAGAGGGGGCTGCAGAAGCTCAAAGGTGAAAGGGTGGGTAAAGATGGTAACTTTAGTTACAAAGTGGATCCTTACACGCTTCGAAATGGGGACTATGTTGTGCACAAGAAAGTGGGTATTGGGATGTTTATTGGGATCAAGATGGATGTTCCTAAGAATTCTGCAGAACCAACTGAGTATGTTTTTATAGAGTACGCAGATGGAATGGCTAAGCTTCCTGTTAAGCAGTCCTCGAAAATGCTCTATAGATATTGTCTTCCAAATGAAAACAAAAAGCCTAAGGCATTGAGCAAGTTGAATGATACTAGTGTGTGGGAGAAAAGAAAGACTAAAGGGAAAGTTGCCATACAGAAGATGGTTGTTGACTTGATGGAACTCTATCTGCATAGGCTCAAACAAAGAAGGCCTCCCTATCCAAAGAGTCCCGCCATGGCTGAATTCACAGCTCAATTTCCTTATGAACCCACGCCGGATCAGAAACAGGCTTTTATTGATGTGGAGAAGGATTTGACTGAACGAGAAACTCCAATGGACAGATTAATTTGCGGAGATGTTGGCTTTGGTAAAACTGAGGTTGCACTGCGTGCTATCCGATGTGTTGTCTCAGCTAAAAAGCAAGCAATGGTTCTGGCACCAACAATAGTTCTAGCAAAGCAGCATTTTGATGTTATTTCAGAGCGCTTTGCTGTATATCCTGATATCAAAGTTGGACTTCTAAGCCGGTTTCAGACGAAAGCAGAGAAAGAAGAGCACTTGGAATCGATTAAGAGTGGTGAGCTGGATATTATTGTTGGGACTCACTCACTTCTTGGAAACCGTGTTGTATATAGCAATCTTGGCCTACTTGTGGTTGATGAGGAACAGAGGTTCGGTGTCAAGCAGAAGGAGAAGATTGCCACTTTTAAAACTTCTGTGGATGTACTTACTTTATCTGCGACCCCTATACCACGGACTCTTTATTTAGCACTGACAGGGTTCCGCGATGCTAGTTTAATTACAACTCCACCTCCAGAAAGAGTTCCTATCAAGACCCACCTGTCATCATTCAGTAAGGAGAAAGTAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTACGTTCTGCCACGTATTAAAGGGCTTGAAGAAGTAATGGAATTTCTTGAAGAGTCATTCCCAGATGTGGAAATAGCCATTGGCCATGGGAAGCAATACTCAAAGCAATTAGAGGATACCATGGAAAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCAGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCGTACAGGATGTTCAACAATTTGGCCTTGCCCAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGGGCAGATAAGGAAGCATATGCTTACTTATTGTATCCTGATAAAAATCTGCTCTCTGATCAAGCATTGGAGAGGCTTTCGGCTCTTGAAGAATGCCGCGAACTTGGTCAAGGCTTCCAACTGGCTGAAAGAGACATGGGTATAAGAGGTTTTGGTACTATTTTTGGTGAACAGCAAACAGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTGTCTAAGGTTGAAGAGCACCGTGTCGTAGCAGTTCCTTATCATTCAGTGCAGGTTGACATAAACATCAATCCTCATCTCCCTTCTGAATACATAAACCATCTGGAGAACCCTATGGAAATAATAAACGAAGCTGAGAGAGTTGCTGAGAAAGACACCTGGAGTTTGATGCAATTTACTGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCCCCATGGAGGTTTTATTAAAAAAGCTGTATCTTAGGAGAATGGCGGCTGATATAGGGATAAACAGAATTTACTCCTCAGGGAAGACGGTCTTTATGAAAGCAAACATCACTAAAAAAGTATTTAAGATGATGACAGATTCGATGACATCAGATATATATAGAAATTCGTTGGTCCTGGAGGGGGACCAAATTAAGGCTGAACTTCTATTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTCCAATGTGTGGCTGAACTTCATGCTTCACTACCCGCCCTCATAAAGTACTAA 2463 0.432 MASLLPCPQQIPTTPFISKLSSSPKPWKLFILSYPLHQKTIKRLTLPSPTKAVYTQGLYVSAPPPSKTDLDNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGKDGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPVKQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHSVQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEVLLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQIKAELLLELPKEQLLNWIFQCVAELHASLPALIKY* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1652 820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 444 IPR014001 -
Lja1g1652 820 SMART ultradead3 263 455 IPR014001 -
Lja1g1652 820 Gene3D - 142 202 - -
Lja1g1652 820 SMART TRCF_a_2_a 670 768 IPR005118 GO:0006281
Lja1g1652 820 SUPERFAMILY CarD-like 133 202 IPR036101 -
Lja1g1652 820 Pfam TRCF domain 672 757 IPR005118 GO:0006281
Lja1g1652 820 CDD DEXHc_TRCF 253 446 - -
Lja1g1652 820 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 8 791 - -
Lja1g1652 820 Gene3D - 203 446 IPR027417 -
Lja1g1652 820 SMART CarD_TRCF_2 138 240 IPR003711 -
Lja1g1652 820 Pfam DEAD/DEAH box helicase 289 427 IPR011545 GO:0003676|GO:0005524
Lja1g1652 820 Pfam Helicase conserved C-terminal domain 468 574 IPR001650 -
Lja1g1652 820 Gene3D - 139 653 IPR027417 -
Lja1g1652 820 Pfam CarD-like/TRCF domain 139 239 IPR003711 -
Lja1g1652 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 589 IPR027417 -
Lja1g1652 820 Gene3D - 666 813 IPR037235 -
Lja1g1652 820 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 8 791 - -
Lja1g1652 820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 619 IPR001650 -
Lja1g1652 820 SUPERFAMILY TRCF domain-like 661 807 IPR037235 -
Lja1g1652 820 SMART helicmild6 491 575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1652 Lja-Chr1 18121770 18133632 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1652 - - gmx:100791900 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1652 1 18121770 18133632 Lja1g1652 1 18121770 18133632 ECH