Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1649 ATGCCGCTATCCACCGTCGCCTCGCCGCCGCCGCCGTCCGAAGAGGCATGGTCACCTCACGACGGTAACGCTTACGACATTAACGACGACTGCGCTTCGTTCACCATCGATTCACTGGACGAGGAGGGTTTCCCATCACAGATCCTCAGCGAACACGAGTTACCGAACACATCAGAAGGAAGCAGTTTCGCCGCCGATTTCTACAGTTGCGGATCCGATTGGTCCTCATTGTTGCCAGGAGAAGATCGTGGGCAAAGAGATCTCGCTCGCGATTCGGCCCCGAAGAAGTTGAAGCAGTCCAATCTGTTCCAGATTTGGGGTTTCAAACGAAACGGTGCCTCTGAACCAGAATCCAGTCATGGTGGTTATTCTGGTAACGGAGATGGTGGCGGTGTTTTTCCTGAGACGAAGATTGTGACACCTGAAAATTGGGGTTCGATTTTGCGCGACACTGGGAAAGTGTTGGAGAACCCTAAATCTTCTCGCAAGAGAAATGATTCCCATAGAGAAAATAGGGTTACACGTGCTTGCCCCTTCTATAAGAAAATGCCAGGGACAGCGTTTACTGTCGATGCTTTTCGTTACGGGTGTGTTGAAGGGTGCTCAGCGTATTTTCTTAGTCATTTCCATAGCGATCACTATGGTGGCCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCTCCTCTCACAGGACGGCTAGTTCAAATGTGTCTCTATGTAAATCCTTCGTACATCCACCCTTTGGAGTTTAACACTGAACATGTGATTGATGGCGTCAAAGTGACTTTGTTAGAAGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTGACCTCCCAAATGGGCAACGTTATTTGCACACTGGGGACTTCAGAGCTTGTAAACAAATGCAAACTCATCATCTTCTTGTAAATCATCGTGTAAATGTACTATATTTGGATACCACATATTGCAACCCTAAGTACAAGTTCCCTTCCAAGGAAGCTGTACTCAATTATGTTGTCAAAATTACGAAGAACCACCTCAAAATGCATCCCAAAACTTTAGTGGTTGTTGGGGCATATAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCGAAGGCACTTGGGGTAAGTGGATTTTTTCTCTAG 1140 0.4632 MPLSTVASPPPPSEEAWSPHDGNAYDINDDCASFTIDSLDEEGFPSQILSEHELPNTSEGSSFAADFYSCGSDWSSLLPGEDRGQRDLARDSAPKKLKQSNLFQIWGFKRNGASEPESSHGGYSGNGDGGGVFPETKIVTPENWGSILRDTGKVLENPKSSRKRNDSHRENRVTRACPFYKKMPGTAFTVDAFRYGCVEGCSAYFLSHFHSDHYGGLSKKWSHGPIYCSPLTGRLVQMCLYVNPSYIHPLEFNTEHVIDGVKVTLLEANHCPGAALIHFDLPNGQRYLHTGDFRACKQMQTHHLLVNHRVNVLYLDTTYCNPKYKFPSKEAVLNYVVKITKNHLKMHPKTLVVVGAYSIGKECVYLAISKALGVSGFFL* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1649 379 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g1649 379 SMART Lactamase_B_5a 21 347 IPR001279 -
Lja1g1649 379 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 80 375 - -
Lja1g1649 379 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 80 375 - -
Lja1g1649 379 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g1649 379 CDD SNM1A-1C-like_MBL-fold 167 322 - -
Lja1g1649 379 MobiDBLite consensus disorder prediction 42 62 - -
Lja1g1649 379 Gene3D - 174 352 IPR036866 -
Lja1g1649 379 SUPERFAMILY Metallo-hydrolase/oxidoreductase 199 373 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1649 Lja-Chr1 18100855 18102512 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1649 K15340 - gmx:100790844 543.117