Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1645 ATGGGTTCTTCTTTATGGACCCTGTGTCTGATTCTGGCATCACTAGCCTCCGCTGCAATCTCTGCCACCCCCCGGAGGCCAGTGGCTGTTCCGTTCGGCCGAAACTACGTCCCCACATGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGATATTCAACTTCTTCTTGACAAGTACACTGGCACTGGCTTCCAATCCAAAGGTTCATACTTGTTTGGTCACTTCAGCATGGACATTAAGATGGTTCCTGATGATTCAGCTGGCACAGTCACTGCTTTCTATTTATCTTCCCAAAACTCGGAGCATGATGAGATAGACTTTGAGTTCTTAGGTAACAGAACAGGACAGCCTTACATTTTGCAAACAAATGTGTTCACCGGAGGAAAAGGTGACAGAGAACAAAGAATCTTTCTCTGGTTTGATCCCACTAAAGCCTTCCACAGATACTCTGTTCTCTGGAATCTGTATCAGATTGTGTTCTTTGTGGACAATATCCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGTGTGAAATTCCCATTTGACCAGCCAATGAAGATCTACAACAGTTTGTGGAATGCAGATGATTGGGCCACAAGGGGTGGTTTGGAGAAAACAAATTGGTCCAAAGCTCCATTTTTAGCTTCTTACAAAGGGTTCCACATTGATGGGTGTGAGGCCTCTGTGAATGCCAAGTTCTGTAACACACAGGGAAAGAGATGGTGGGACCAGCCGGAGTTCCGCGACCTTGACGCGGCACAGTGGCGGAGGCTCAGGTGGGTGCGTAGGAAATACACCATCTACAACTACTGCAATGATAGGCAACGCTTCCCACAACGTGCCCCTGAATGCAGCAGAAACCTGGCTCAACCTTCTACTCAACTTGTGACTCAGAAAATGGGTTCTCAGATTTGGACCCTGTTTCTGATTCTTGCATCACTGGCTTGTGCTGCTCATTGCGCCGCCCCACGGACACCAGTGCCGGTTCCATTTGGCCGTAACTACTACCCCACTTGGGCTTTTGATCACATCAAATACTTCAATGGAGGTTCTGAGATTCAGCTCCATCTTGACAAGTACACTGGCACTGGCTTCCAATCCAAAGGTTCATACTTGTTTGGTCACTTCAGCATGGACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTATTTATCTTCCCAAAACTCAGAGCACGATGAGATAGACTTTGAGTTCTTAGGGAACAGATCAGGACAACCTTACATTCTGCAAACAAATGTTTTCACCGGAGGTAAAGGTGACAAAGAACAAAGAATCTTTCTCTGGTTTGATCCTACAAAAGCCTTCCACAGATACTCTGTTCTCTGGAACTTGTATCAGATTGTGTTCTTTGTGGATGATGTCCCAATCAGGGTGTTCAAGAACAGCAAGGATTTGGGTGTGAGATTCCCATTTGACCAACCAATGAAGATCTACAACAGCTTATGGAATGCAGATGATTGGGCAACAAGGGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCTCCATTCATTGCATCATACAAAGGCTTCCACATTGATGGGTGTGAAGCTTCAGTGAATGCTAAATTCTGCGCCACCCAGGGGAAGAGTTGGTGGGACCAACCGGAGTTCCGCGACCTTGACGCTGCTCAGTGGCGGAGGCTCCGGTGGGTCCGCCAGAAATACACCATCTATAACTACTGCACTGACAGGAAGCGCATTCCTATACTGCCCCCAGAGTGCAAAAGAGACCGTGACATTTAA 1788 0.4692 MGSSLWTLCLILASLASAAISATPRRPVAVPFGRNYVPTWAFDHIKYFNGGSDIQLLLDKYTGTGFQSKGSYLFGHFSMDIKMVPDDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIFLWFDPTKAFHRYSVLWNLYQIVFFVDNIPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTNWSKAPFLASYKGFHIDGCEASVNAKFCNTQGKRWWDQPEFRDLDAAQWRRLRWVRRKYTIYNYCNDRQRFPQRAPECSRNLAQPSTQLVTQKMGSQIWTLFLILASLACAAHCAAPRTPVPVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMDIKMVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRSGQPYILQTNVFTGGKGDKEQRIFLWFDPTKAFHRYSVLWNLYQIVFFVDDVPIRVFKNSKDLGVRFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCATQGKSWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDRKRIPILPPECKRDRDI* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1645 595 CDD GH16_XET 329 589 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja1g1645 595 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja1g1645 595 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 325 522 IPR000757 GO:0004553|GO:0005975
Lja1g1645 595 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 291 IPR044791 GO:0004553
Lja1g1645 595 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 220 IPR000757 GO:0004553|GO:0005975
Lja1g1645 595 Gene3D - 320 595 - -
Lja1g1645 595 Gene3D - 17 292 - -
Lja1g1645 595 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Lja1g1645 595 Pfam Glycosyl hydrolases family 16 335 515 IPR000757 GO:0004553|GO:0005975
Lja1g1645 595 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 304 593 - -
Lja1g1645 595 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 291 - -
Lja1g1645 595 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 542 589 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja1g1645 595 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja1g1645 595 ProSitePatterns Glycosyl hydrolases family 16 active sites. 408 418 IPR008263 GO:0004553|GO:0005975
Lja1g1645 595 SUPERFAMILY Concanavalin A-like lectins/glucanases 333 593 IPR013320 -
Lja1g1645 595 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Lja1g1645 595 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 304 593 IPR044791 GO:0004553
Lja1g1645 595 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 290 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1645 Lja-Chr1 18043898 18064517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1645 303 595 Glycoside Hydrolase AT5G13870 79.181 5.81e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1645 K08235 - gmx:547775 553.518