Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1644 ATGGCTTCAGCTACTCTCTCATTAGCCAAACCAGCTCTTAAGGCAAATGGGAAAGGCTTCTCTGATTTCTCCGGCCTCCGATCAGCCAACCTTCCCTTTTCTAGAAAAACTTCAGAGGACTTCCATTCTGTCATTGCCTTCCAGACATACGCAGTTGGAAGCAGTGGAGGATACAAGAAAGGTGTAGTGGAAGCAAAGCTGAAGGTGGCCATAAACGGTTTCGGTAGGATTGGAAGGAACTTCTTGAGGTGCTGGCACGGTCGAAAGGACTCTCCTCTGGATGTCATTGCTATCAATGACACCGGAGGTGTCAAGCAAGCTTCTCACCTTCTCAAGTACGATTCCACCCTTGGAATCTTTGGTGCTGATGTCAAGCCTGTTGGTACTGATGGCATCTCTGTAGATGGAAAGGTCATCAAAGTTGTTTCCGACCGTAACCCTGCAAACCTTCCATGGGGGGAGTTAGGGATTGATTTGGTGATTGAAGGAACAGGGGTGTTCGTGGACAGAGAAGGTGCAGGCAAGCACATTCAAGCAGGAGCTAAGAAGGTTCTCATCACAGCCCCTGGCAAGGGAGACATCCCAACCTACGTTGTTGGAGTTAATGCTGATGCTTACAGCCATGATGATGACATCATCAGCAATGCTTCTTGCACTACTAACTGCCTTGCCCCTTTTGTCAAGGTTCTTGATCAGAAATTTGGTATTATCAAGGGTACCATGACTACCACTCACTCCTACACCGGTGACCAGAGGCTTCTTGATGCCAGCCACCGTGACCTCCGCCGTGCGAGAGCAGCAGCTCTCAACATTGTCCCTACATCAACAGGAGCAGCAAAGGCTGTGGCCCTTGTCCTCCCAACCCTCAAAGGCAAGCTCAACGGCATTGCCCTCCGTGTGCCGACACCAAACGTTTCGGTGGTGGACCTTGTTGTTCAGGTCACAAAGAAGACTTTCGCAGAGGAAGTGAATGCAGCATTCAGAGAGAGTGCAGACAATGAGCTCAATGGCATCCTCTCAGTTTGTGATGAGCCCCTTGTGTCAGTAGATTTTAGGTGCACTGATGTGTCCTCAACCGTTGACTCATCTTTGACCATGGTCATGGGAGATGACATGGTGAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCTCAGAGGGTTGTGGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA 1206 0.4917 MASATLSLAKPALKANGKGFSDFSGLRSANLPFSRKTSEDFHSVIAFQTYAVGSSGGYKKGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFGADVKPVGTDGISVDGKVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYSHDDDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRESADNELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1644 401 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 234 IPR036291 -
Lja1g1644 401 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 401 IPR020831 GO:0016620
Lja1g1644 401 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 401 - -
Lja1g1644 401 SMART gp_dh_n_7 67 218 IPR020828 GO:0051287
Lja1g1644 401 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 68 391 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lja1g1644 401 Gene3D Dihydrodipicolinate Reductase; domain 2 217 381 - -
Lja1g1644 401 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 223 379 IPR020829 GO:0016620
Lja1g1644 401 Gene3D - 68 393 - -
Lja1g1644 401 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 68 169 IPR020828 GO:0051287
Lja1g1644 401 PIRSF GAPDH 65 401 IPR020831 GO:0016620
Lja1g1644 401 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 212 230 IPR020831 GO:0016620
Lja1g1644 401 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 176 189 IPR020831 GO:0016620
Lja1g1644 401 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 295 312 IPR020831 GO:0016620
Lja1g1644 401 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 239 255 IPR020831 GO:0016620
Lja1g1644 401 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 335 350 IPR020831 GO:0016620
Lja1g1644 401 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 216 223 IPR020830 GO:0016620
Lja1g1644 401 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 218 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1644 Lja-Chr1 18030506 18034140 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1644 K05298 - gmx:100815649 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1644 1 18030506 18034140 Lja1g1644 1 18030506 18034140 ECH