Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1643 ATGGGCGTAACCAGCGACCCGACCCAAGACGGCTCCGACGAGCAGCAAAAACGCTCCGAGATCTACACCTACGAAGCCCCATGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAAAAGTACCGCCTCGCCATCGCCTCCCTCCTCGAACAATACCCCAACCGCGTCGAGATCGTCCAGCTCGACGACTCCAACGGCGAGATCCGACCCGACCCGAATCTCTCCTTCGAACACCCATACCCACCCACCAAGGCCATTTTCATCCCTGACAAAGAGTGTCAACGCCCTGACCTCCTCGCCACCTCCAGCGACTTCCTCCGCGTGTGGCGGATCTCCGACGCCGATGAAACCCAACCCTCCGCCGCCACCCCCCGCGTCGAACTCAAGAGCCTCCTTAACGGAAACAAGAACAGCGAGTATTGTGGCCCGTTAACCTCCTTCGATTGGAACGAAGCTGAGCCTCGCCGCATCGGAACCTCCAGCATCGACACCACCTGCACCATTTGGGATATCGAGAAGGAAACCGTCGATACCCAGCTCATCGCGCATGATAAGGAGGTTTACGACATCGCGTGGGGCGGCGTTGGGGTTTTCGCCTCCGTCTCCGCCGATGGCTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAACACTCCACCATAATCTACGAGAGCTCTGAGCCTGACACGCCGCTGGTGCGGCTCGGTGCGAAGGTGGTGGTTCTTGACATTCGCTTCCCCACGCTTCCGGTTGTGGAGCTTCAGCGGCATCAGGCTAGTGTTAACGCCGTCGCGTGGGCGCCGCATAGCTCTTGCCATATCTGCACCGCCGGCGATGACTCGCAGGCTTTGATTTGGGATCTTTCTTCCATGGGGCAACCGGTGGAGGGTGGGCTTGACCCGATTCTTGCTTATACTGCTGGTGCTGAGATTGAGCAGCTTCAATGGTCGTCTTCTCAGCCTGATTGGGTTGCCATTGCTTTCTCCACCAAGCTTCAGATTCTCAGGGTTATTGAGGAGAAATTAGACTTTAGGGAAGCACTGGAAAGACCGAATAAATATGTTTTAACGATAATTTTTTATTTTTAA 1092 0.5632 MGVTSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRPDPNLSFEHPYPPTKAIFIPDKECQRPDLLATSSDFLRVWRISDADETQPSAATPRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGAKVVVLDIRFPTLPVVELQRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRVIEEKLDFREALERPNKYVLTIIFYF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1643 363 SUPERFAMILY WD40 repeat-like 44 297 IPR036322 GO:0005515
Lja1g1643 363 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Lja1g1643 363 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 291 - -
Lja1g1643 363 SMART WD40_4 248 288 IPR001680 GO:0005515
Lja1g1643 363 SMART WD40_4 127 172 IPR001680 GO:0005515
Lja1g1643 363 SMART WD40_4 175 213 IPR001680 GO:0005515
Lja1g1643 363 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 291 IPR001680 GO:0005515
Lja1g1643 363 PANTHER WD REPEAT CONTAINING PROTEIN 13 338 IPR045159 -
Lja1g1643 363 Gene3D - 19 338 IPR015943 GO:0005515
Lja1g1643 363 Pfam WD domain, G-beta repeat 182 213 IPR001680 GO:0005515
Lja1g1643 363 Pfam WD domain, G-beta repeat 255 288 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1643 Lja-Chr1 18024657 18029970 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1643 K11805 - pop:7466288 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1643 1 18024657 18029970 Lja1g1643 1 18024657 18029970 ECH