LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1642	ATGAAGATTTCATGTTGCAACCCTGATGCTAATGTCCCTCACTTCAATACCCCAACAACAAGGTTTGATTCACAACAAGCTCTTGTCACTCTTGAAAATTGTTGCAATTTCAAGCAGCTCAAGCAAGTTCATGGTAGAATAATCCGGTCTGGTCTCACCCATGACCAAGTGCTTCTCAGGAAGCTTCTTCAGCATTCTTGTGCATATGGCAAAATGAACTATGCTAGTTTGGTGTTTGATCAAATCAATGCCCCTGATTCATTCACCTGGAATGTCATGATTAGAGGTTGTACTTTGAGTGGTTCCCCTGAACATGCCCTTGTTTTGTTCAAGGAAATGCTATTGAAGGGGTTTGCACCTGACAAGTTTACATACCCTTTTGTGATTAAGGCTTGCATTGCTTCTAATGCCTTTGATTTTGGTAGAGCAGTGCATGCTTTAGCTATTAAAATGAGATTCTGGGGTGACACTTATGTGCAGAACACTATGATGAATTTTTACTTCAAGTGTGGGAATGAAGAGGATGGGTGTAAGGTGTTTGATAAAATGCGCGGCTGCAGTGTGGTCTCTTGGACGACTTTGATTGCTGGGCTTATTGCTTGTGGGAAAGTGGATCGTGCCAGGGAAGTGTTTGATGAAATGCCTTCGAAGAATGTAGTGTCGTGGACAGCGATGATTGATGGGTATGTGAAATGCCAGCGCCCGGTTGAAGCTTTCGATTTGTTTGAAGGGATGCAGATTGAGAACGTGAGGCCGAATGAGTTCACTTTAGTGAGCTTGGTCAGTGCTTGTACTGAGATGGGTAGCCTTAAGTTGGGGAAATGGATTCATGATTATGCTATCAAGAATGGTATTGAGCTTGGCCCTTTTTTGGGTACTGCTCTTATTGACATGTATAGCAAATGTGGAAGTTTAGATGATGCATGGATAGTGTTTGGTATAATGACTGAGAGAAACTTGGCTACTTGGAACACAATGATCACTAGCTTGGGTGTGCATGGGTTGAGCGAGGAAGCCCTAGACCTTTTTAAAGAAATGGAGAAGGCGAATGTAGTTCCGGATGCTGTTACTTTTGTTGGTGTTCTGAGTGCTTGTGTTCATATGCATGATGTGGAAGAAGGTGAGAGGTATTTCAGTCTCATGACAGAACATTATGGTATATCACCAATATTGGAGCACTATGTATGCATGGTTGAACTCTATACTGGTGATAGTGAATTAGATGAGGTTTACACATCAGAGGAGGCCATGTCATTGTCAATGAAAACAAATCAAAATGTTGTGGAATTGCTCCAAGAGAGTAAACTCACTAGTGTTGATGACATAAAGGAAGTCATAAACAAGCATTATGGGGATTTGAATTTCTCAAAACTAGATTTAGATCATTCCTCTGTGAGTTCTGTACCTGAAACCCAGGAGCTTCATGCAAGTAGATGA	1437	0.4161	MKISCCNPDANVPHFNTPTTRFDSQQALVTLENCCNFKQLKQVHGRIIRSGLTHDQVLLRKLLQHSCAYGKMNYASLVFDQINAPDSFTWNVMIRGCTLSGSPEHALVLFKEMLLKGFAPDKFTYPFVIKACIASNAFDFGRAVHALAIKMRFWGDTYVQNTMMNFYFKCGNEEDGCKVFDKMRGCSVVSWTTLIAGLIACGKVDRAREVFDEMPSKNVVSWTAMIDGYVKCQRPVEAFDLFEGMQIENVRPNEFTLVSLVSACTEMGSLKLGKWIHDYAIKNGIELGPFLGTALIDMYSKCGSLDDAWIVFGIMTERNLATWNTMITSLGVHGLSEEALDLFKEMEKANVVPDAVTFVGVLSACVHMHDVEEGERYFSLMTEHYGISPILEHYVCMVELYTGDSELDEVYTSEEAMSLSMKTNQNVVELLQESKLTSVDDIKEVINKHYGDLNFSKLDLDHSSVSSVPETQELHASR*	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1642	478	Pfam	PPR repeat family	85	132	IPR002885	-
	Lja1g1642	478	Pfam	PPR repeat family	319	366	IPR002885	-
	Lja1g1642	478	Pfam	PPR repeat family	217	264	IPR002885	-
	Lja1g1642	478	Gene3D	Tetratricopeptide repeat domain	144	219	IPR011990	GO:0005515
	Lja1g1642	478	Gene3D	Tetratricopeptide repeat domain	14	143	IPR011990	GO:0005515
	Lja1g1642	478	Pfam	PPR repeat	161	186	IPR002885	-
	Lja1g1642	478	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	319	353	IPR002885	-
	Lja1g1642	478	TIGRFAM	PPR: pentatricopeptide repeat domain	322	355	IPR002885	-
	Lja1g1642	478	TIGRFAM	PPR: pentatricopeptide repeat domain	220	254	IPR002885	-
	Lja1g1642	478	TIGRFAM	PPR: pentatricopeptide repeat domain	159	188	IPR002885	-
	Lja1g1642	478	TIGRFAM	PPR: pentatricopeptide repeat domain	88	121	IPR002885	-
	Lja1g1642	478	TIGRFAM	PPR: pentatricopeptide repeat domain	189	219	IPR002885	-
	Lja1g1642	478	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	18	428	-	-
	Lja1g1642	478	Gene3D	Tetratricopeptide repeat domain	268	452	IPR011990	GO:0005515
	Lja1g1642	478	Pfam	PPR repeat	187	214	IPR002885	-
	Lja1g1642	478	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	86	120	IPR002885	-
	Lja1g1642	478	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	218	252	IPR002885	-
	Lja1g1642	478	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	187	217	IPR002885	-
	Lja1g1642	478	PANTHER	BNAA06G32750D PROTEIN	18	428	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1642	Lja-Chr1	18007733	18009541	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1642	236	418	Glycoside Hydrolase	AT3G49170	27.835	8.03e-12	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1642	-		-	gmx:100789790	672.93