Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1627 ATGATCAGAATCCGATCTAAGCTATCTTCTGTGCTGCAACGCATCAGCCAGACCAAACAAGGCGCGAATCACTTTCGTCGTCGTTTAGTTAATCCCAATGTTTTTGACACTGCTTTAGCTCCTCCACTAAATTTTGGTTACTTACCGAGGCTCTTTTCAAGTTCATCTTCAATCAGAAGCCTTGGGGTGTCAACTGATTCCCCTAATGGTACTAGATTACATATAAGGGATGTTGTTCTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCACGAACCGGGTTCTCGACCATCTGAGATTAAGCATAAGCTTGAGCTTTGCTGTGTTAGGGTGTCGTCAGAGCTGGTTGTGGAGGTCCTTTCGAGAATTCGCAACGATTGGGAAGCCGCGTTCACGTTTTTCTTGTGGGCTGGGAAGCAACCGGGGTATGCTCATTCGGTTCGTGAGTACCATTCCATGATCTCCATCCTTGGGAAAATGAGGAAGTTTGATACTGCTTGGAACTTGATTGAGGTGATGAGAGGAGGTGGAACTGGTCCGTCTCTTGTCACCCCGCAAACTCTCTTGATCATGATCAGGAAATACTGTGCTGTGCGTGATGTTGGGAGGGCTATAAACACTTTCTATGCTTTTAAGCGGTTTGGCTTTCAAGTTGGGATAGACGAATTTCAAGGCCTTCTTTCTGCCCTTTGCCGGTACAAGAATGTGCAGGATGCTGAGCACTTACTTTTCTGCAATAAAAATGTATTCCCTCTTGAAATCAAGAGCTTTAACATCATTCTGAATGGATGGTGCAACTTGATTGTTAGCGCGCGAGAAGCAGAAAGGGTTTGGCATGAGATGAGCAAGAGAGGAATCCAACATGATGTTGTGTCCTATGCAAGCATCATGTCTTGCTATTCAAAATCTTCCAAACTTTACAAGGTGTTCCAGCTGTTTGATCAGATGAAGAACAAGAAGATTACTCCAGATAGGAAGGTTTATAATGCTGTCATTCATGCTCTTGCGAAGGGTAGGCTTGTGAAAGAAGCTGTCAATCTCCTTCAAACAATGGAGAAAAACAATGTTACTCCTGATGTTGTTACTTACAACTCGCTGATCAAGCCCCTCTGCAAAAACCGCAAAATTGATGAAGCCAAAGAAGTTTTTAATGATATGATGAAGCGGAACATAACCCCAACAATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGGGTTGAGGAAGAAGTATTTGAGCTTCTGGACAAAATGAGAGAGCTAGGGTGCTACCCAACTATTGAGACTTACATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCAAGCTGGATGAAGTCTTTAAGATATGGAATATGATGAGGGAAGACGGAGTCAGCCATGATCGCAGCTCTTATATTGTACTGATTCATGGGCTGTTTCTGAATGGAAAGGTGAAGGAAGCACACGATTATTACATAGAGATGCAAAGGAAAGGGTTCCTCCCTGAACCAAAGACAGAACAGATGCTGCAGGCATGGCTTTCTGGGAGACAGGGAACAGAAGGCCAGGTGACAGATTTAGAACACAATCAATTGGAAGATGATACTGTTGAAAAGAAAGTCAAGGCCACACCCAGTAAATTTGATAAGGAAAAAGCTTTTCTTCGCGAACCCGAGACCAGAAGAGTAACAAGAGATCGGGCAATGCAGTCAATTTGTAGGCCTTCATTGAGTGAAAACGGAAACTGCAACGCGACGCTAGCTAGCCAATCAGCTACCTGGTTCACATCCCTCTGCACAAAACAACAAGATAATGATCCGAATGAATCTTGTGAAGCACTTCTACATAGAACTTCTGGAGGAAGAGATCTCGTCCAATGGATTACATTTTGCAATTGA 1881 0.4322 MIRIRSKLSSVLQRISQTKQGANHFRRRLVNPNVFDTALAPPLNFGYLPRLFSSSSSIRSLGVSTDSPNGTRLHIRDVVLAQDVKTILDIMHEPGSRPSEIKHKLELCCVRVSSELVVEVLSRIRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFYAFKRFGFQVGIDEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLEIKSFNIILNGWCNLIVSAREAERVWHEMSKRGIQHDVVSYASIMSCYSKSSKLYKVFQLFDQMKNKKITPDRKVYNAVIHALAKGRLVKEAVNLLQTMEKNNVTPDVVTYNSLIKPLCKNRKIDEAKEVFNDMMKRNITPTIRTFHAFFRILRVEEEVFELLDKMRELGCYPTIETYIMLIRKFCRWRKLDEVFKIWNMMREDGVSHDRSSYIVLIHGLFLNGKVKEAHDYYIEMQRKGFLPEPKTEQMLQAWLSGRQGTEGQVTDLEHNQLEDDTVEKKVKATPSKFDKEKAFLREPETRRVTRDRAMQSICRPSLSENGNCNATLASQSATWFTSLCTKQQDNDPNESCEALLHRTSGGRDLVQWITFCN* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Lja1g1627 626 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 67 558 - -
Lja1g1627 626 Gene3D Tetratricopeptide repeat domain 410 572 IPR011990 GO:0005515
Lja1g1627 626 Pfam Pentatricopeptide repeat domain 277 336 IPR002885 -
Lja1g1627 626 PANTHER OS01G0816000 PROTEIN 67 558 - -
Lja1g1627 626 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Lja1g1627 626 TIGRFAM PPR: pentatricopeptide repeat domain 465 496 IPR002885 -
Lja1g1627 626 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Lja1g1627 626 TIGRFAM PPR: pentatricopeptide repeat domain 430 462 IPR002885 -
Lja1g1627 626 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Lja1g1627 626 Pfam PPR repeat 465 494 IPR002885 -
Lja1g1627 626 Pfam PPR repeat 430 459 IPR002885 -
Lja1g1627 626 Pfam PPR repeat 151 177 IPR002885 -
Lja1g1627 626 Gene3D Tetratricopeptide repeat domain 270 409 IPR011990 GO:0005515
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Lja1g1627 626 Pfam PPR repeat family 359 403 IPR002885 -
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Lja1g1627 626 Gene3D Tetratricopeptide repeat domain 82 248 IPR011990 GO:0005515
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 289 IPR002885 -
Lja1g1627 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1627 Lja-Chr1 17718073 17725945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1627 255 592 Glycosyltransferase AT1G05670 27.654 7.45e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1627 - - gmx:100812155 827.394