Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1615 ATGGGTGCGAGTCGAAAGCTTCAGGGTGAGATAGATCGCGTTCTCAAGAAGGTTCAAGAAGGCGTTGAGGTCTTCGATAGTATCTGGAACAAGGTTTACGATACGGACAATGCAAACCAGAAGGAGAAATTTGAGGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTATAGAGACCAAATCAAGACTTGGATTCAATCCAGTGAGATCAAGGATAAGAAGGTTAGTGCCTCGTATGAGCAGGCTCTGGTGGATGCGCGGAAGCTAATTGAGCGAGAAATGGAAAGATTTAAGATCTGTGAGAAAGAAACTAAGACCAAAGCTTTCTCCAAAGAAGGCTTGGGTCAGCAGCCTAAGACCGATCCAAAAGAGAAAGCAAAATCAGAGTCAAGGGAATGGCTAAACAATGTGGTTGGAGAGTTAGAATCTCAAATTGATAGCTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAGAAAGGAAAGAACAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTCATTTTGAGGCTGCTAGACAATGATGAATTAAGTCCTGAGGAGGTTAATGATGTCAAAGATTTCTTGGACGACTATGTAGAGCGTAATCAGGAGGATTTTGACGAGTTCGATGACGTTGATGAACTATACAGTTCATTGCCTTTAGACAGGGTGGAGACTCTAGAAGATCTTGTTATGATTCCCCCTGGTCCTGTTAAGGTGGCACCTGTTCTTAGCTTGAAGACTACATTGACAGCATCAGCATCACAATCAGCGTCAGCATCTGCATCACAAACTTCTGAGCAAGCTGATGACGCAGCATCACAAGATAGCAATTCTGACATTGTTGCTAAAACTCCACCTCCTAAAAGTAGTGGGATTAGTTCTGCTCCATCAACTCCTGCGGGGAACCATACTACTCCTGTGTCTGTGAATGTTGCTGGTCAATTGCCCGGTGCACCAGCTGCTGCAGTCCTGTCTGGTTCAATTTCTGTTCGGAATATCTTGGAGAATGTTGCTGTTACCAATTCTTCACCTACTCATCAGTCTACCCCTACAAAGGAAGAAGAGATTAATAACTTCCCTAGCAGAAGACCATCTCCATCGCTTTCTGATGCAGCACTTGTGAGGGGCAGAAACAGCCTGTCAAATCCAGCAACTTCTGGCATCACTCTCGGTCCTGGAAGTATGGTTCCCAACAATGTGGCCCTTGGTTCAGTCCCTTCAGCCTCAGAAATAACTAAGAGGAATATATTGGGAGCTGATGATAGACTTGGGAGTAGTGGAATGGTGCAGCCTCTTGTGTCCCCGTTAAGTAATAGATTGATCTTGCCTCAGGTTGCTAAGGCTAATGATGGAATGTCAGCTGACTCTAGTACTGTTAATGAAGCTGCAGCTGTATCGGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAACGATGCAGGGCAGCTTCGTGCAAGAACTGAAATTGCTCCTGATCAGAGGGAAAAATTTCTGCAGAAGTTCCAGCAAGTGCAGCAACAAGGGCCTAGTACCCTTCTTAACATGCCTTCTCTTGTTGGAGGAAATCACAAGCAGTTTTCAGCCCAGCAGCAAAATCCACTTCTGCAGCAGTTTAACACTCAAGGATCATCTGTTTCTTCTCAATCCGGTATGGTACTTGGAGTCCAGTCCCCGAGTCTCAGTAGTATTTCTCCTGCCTCAATACAGCAGCCACCCAATTCTGCTCATTCCCCATCCAGTCAACAGCCATTGATTCCGGGTGTTGCTAAAGATGCAGATGTTGGCAATTCTAAGGTTGAGGAACAGCAGCAACATCAGAATTATGCTGATGAGTCAACAGCGGAATCTCCTTCTAGCAATGGGATTGGCAAGAATCTTGCAATTGAAGATGATTTGAAATCAGCATATGCTGTAGATTCACCTGCAGGAGTATCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGAGATATAGATTTGTCTCCTGGACAACCATTACAATCCAATCAACCTACTGGTAACCTTGGTGTCATTGGAAGAAGAAATGGTGCTGAGCTTGGAGCCATCGGTGATAGTTTTAGTGGATCGAGTGTCAATTCTGGTGGAGTGCGTGATCAGCTATATAATTTACAAATGCTCGAGGCAGCACATCACAAAATTCCTCTAGCTAAAGACTCAGAACGTCCTAGGACTTATACTCCTAGGCACCCAACAATTACACCTCCTACCTATCCTCAAATACAGGCACCTATAGTTAATAATCCTGCCTTTTGGGAGAAAGTGGGACAGGAACCATTCGGCACCGACACCTTGTTCTTCGCATTTTATTATCAACAGAACACATACCAACAATATTTGGCTGCAAGGGAGCTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATCATACATGGTTTCAGCGACATGAAGAACCCAAAGTTGCTACCGATGAATTTGAGGAGGGAACATATGTGTACTTTGATTTTCATATTGCAAATGATGACCTGCAACATGGATGGTGTCAAAGAATCAAGACTGGATTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTGTTGTATAG 2667 0.4436 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSESREWLNNVVGELESQIDSFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDRVETLEDLVMIPPGPVKVAPVLSLKTTLTASASQSASASASQTSEQADDAASQDSNSDIVAKTPPPKSSGISSAPSTPAGNHTTPVSVNVAGQLPGAPAAAVLSGSISVRNILENVAVTNSSPTHQSTPTKEEEINNFPSRRPSPSLSDAALVRGRNSLSNPATSGITLGPGSMVPNNVALGSVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLILPQVAKANDGMSADSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRARTEIAPDQREKFLQKFQQVQQQGPSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNTQGSSVSSQSGMVLGVQSPSLSSISPASIQQPPNSAHSPSSQQPLIPGVAKDADVGNSKVEEQQQHQNYADESTAESPSSNGIGKNLAIEDDLKSAYAVDSPAGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGAELGAIGDSFSGSSVNSGGVRDQLYNLQMLEAAHHKIPLAKDSERPRTYTPRHPTITPPTYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHIANDDLQHGWCQRIKTGFTFEYNYLEDELVV* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1615 888 Pfam NOT2 / NOT3 / NOT5 family 745 882 IPR007282 GO:0006355
Lja1g1615 888 MobiDBLite consensus disorder prediction 110 132 - -
Lja1g1615 888 Coils Coil 41 61 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 583 611 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 671 706 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 270 323 - -
Lja1g1615 888 Gene3D - 728 883 IPR038635 -
Lja1g1615 888 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Lja1g1615 888 PIRSF NOT_su_3_5 1 888 IPR012270 GO:0006355|GO:0030015
Lja1g1615 888 MobiDBLite consensus disorder prediction 626 650 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 356 380 - -
Lja1g1615 888 PANTHER CCR4 NOT-RELATED 1 888 IPR040168 GO:0030015
Lja1g1615 888 PANTHER BNAA10G16600D PROTEIN 1 888 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 118 132 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 673 703 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 356 384 - -
Lja1g1615 888 Coils Coil 132 159 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 754 773 - -
Lja1g1615 888 MobiDBLite consensus disorder prediction 583 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1615 Lja-Chr1 17513616 17524774 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1615 K12580 - gmx:100783415 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1615 1 17513616 17524774 Lja1g1615 1 17513616 17524774 ECH