Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1614 ATGGTTGAAAACTGGGTTTTCCGATGGGTGGTGTTGGTGGTTGCGGCGGCGGTGATGGGCGTGGAAGGGCTTGGTGTGAACTGGGGAACCCAAGCGACCCACAAGCTGCCACCGGCGACGGTGGTTCAGTTGATGAAGGATAATGGGATTCAGAAGGTGAAGCTTTTTGATGCGGATGATTCCACCATGGCTGCTCTTGCTGGGTCTGGGATTGAAGTCATGGTTGCAATCCCTAATAATCAGCTTGCTGTCATGAATGACTATGGTCGAGCCAAACAATGGGTTAGGAAGAATGTCACTCGTTACAACTTCAATGGTGGAGTTAACATCAAGTATGTTGCAGTTGGGAATGAGCCATTTTTGAAATCTTACAACAATTCATTCTTGAACATTACTCTACCTGCACTGCAGAACATTCAAAATGCCCTCAACGAAGCCGGTGTCGGAGATACCGTAAAGGCTACAGTGCCCTTGAATGCTGATGTCTACCAGTCTCCACAGGATAATCCAGTTCCTTCAGCAGGAATATTCAGGCCTGATATCAGTGGTCTCATGACTCAAATGGTGCAATTTCTCAGCAAGAACGGCGCACCATTTACCGTGAACATCTACCCCTTCTTGAGTCTCTATGGGAACGATGATTTTCCTTTCGACTACGCCTTCTTTGATGGAGTACCAAACCCCATAATTGATAATGGGATTCAATACACCAATGTCTTCGATGCGAACTTTGACACCTTGGTTTCTGCTCTCAAAGCAGCAGGGTATGGAAACATTCCTATTTTGGTAGGAGAAGTAGGGTGGCCTACAGAAGGGGACAAGAACGCCGATGTAGGCAAAGCTCTGAGATTCTACAACGGGCTCCTGCCGAGGCTTGCCGGGAATAAAGGAACCCCGCTCCGGCCCGGATTCATCGAAGTTTATCTCTTCGGACTCATCGATGAGGATGCCAAGAGCATTGCTCCGGGGAACTTCGAGCGCCACTGGGGGATTTTCAGATATGACGGGCAGCCAAAGTTTCCGATGGATCTTTCGGGTCAGGGTCAGAACAAGCTCCTCATAGGTGCACAGAATGTGAAGTATCTTGAACCAAAGTGGTGCATGTTTAACCCTGACGCAAAGGATCTCAGCAAACTCGCGGATAACATTAACTACGCTTGCACCTTTGCAGATTGCACTGCACTTGGGTATGGATCTTCTTGCAACCACCTTGATGCTAATGGGAACGCCTCTTACGCGTTTAACAGTTACTTCCAGGTGCAGAATCAGGATCGCATGGCCTGCAATTTTCAAGGGTTAGCTAAGCTTACTACAGACAATATCTCAACACCATCTTGCAATTTCATTGTTCAGATAGTTTCTTCTTCATCTTCTTCTTTGGTGCCATCTCTTGTAGCTTTCTTATTTATTACCTTATCCTTCATTCTATTTAATTAG 1437 0.4676 MVENWVFRWVVLVVAAAVMGVEGLGVNWGTQATHKLPPATVVQLMKDNGIQKVKLFDADDSTMAALAGSGIEVMVAIPNNQLAVMNDYGRAKQWVRKNVTRYNFNGGVNIKYVAVGNEPFLKSYNNSFLNITLPALQNIQNALNEAGVGDTVKATVPLNADVYQSPQDNPVPSAGIFRPDISGLMTQMVQFLSKNGAPFTVNIYPFLSLYGNDDFPFDYAFFDGVPNPIIDNGIQYTNVFDANFDTLVSALKAAGYGNIPILVGEVGWPTEGDKNADVGKALRFYNGLLPRLAGNKGTPLRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQGQNKLLIGAQNVKYLEPKWCMFNPDAKDLSKLADNINYACTFADCTALGYGSSCNHLDANGNASYAFNSYFQVQNQDRMACNFQGLAKLTTDNISTPSCNFIVQIVSSSSSSLVPSLVAFLFITLSFILFN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1614 478 Pfam Glycosyl hydrolases family 17 24 343 IPR000490 GO:0004553|GO:0005975
Lja1g1614 478 Gene3D Glycosidases 23 351 - -
Lja1g1614 478 SMART X8_cls 365 448 IPR012946 -
Lja1g1614 478 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 3 465 IPR044965 GO:0004553|GO:0005975
Lja1g1614 478 Pfam X8 domain 365 434 IPR012946 -
Lja1g1614 478 Gene3D - 362 460 - -
Lja1g1614 478 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 3 465 - -
Lja1g1614 478 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Lja1g1614 478 SUPERFAMILY (Trans)glycosidases 24 343 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1614 Lja-Chr1 17504021 17507046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1614 11 476 Miscellaneous Gene Families AT1G64760 74.893 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1614 - - gmx:100815300 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1614 1 17504021 17507046 Lja1g1614 1 17504021 17507046 ECH