Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1608 ATGGCAGAAGAACAAGGATATAATGGCTTAGAAGAAGGGAGCCCATTGCAATTGGTGAACCCCACTGTTCCCACTATTCAGAATATTGTGTCCACAGTGAACTTGGATTGTGCCTTGGATCTTAAGAAGATTGCACAACAAGCTCGCAATGCTGAATACAATCCCAAGCGTTTTTCTGCTGTCATCATGAGGATAAGGGAACCAAAAACAACAGCTTTGATATTTGCTTCTGGAAAGATGGTCTGCACAGGTGCTAAAAATGAACAACAGTCAAAACTTGCAGCAAGAAAGTATGCTAGAATTATCCAAAAGCTTGGATTTCCAGCTGCCAAATTTAAGGACTTCAGAATTCAGAATATTGTTGCCTCCTGTGATGTTAAGTACACTCTCGGACTTGAACTTCTAGCGTTCGAACTACGCCCCTTTTCAACTTATGAGCCAGAAATATTTCCTGGCTTAATATATCGCATGAAGCAGCCAAACATTGTTTTCCTCATATTTGTGTCTGGAAAAATTGTGCTTACTGGAGCCAAGGCAAGAGAGGAGATATACACAGCTTATGAGAAGATGCATCCTGTTCTTGCAAGGTTTAGGAAAATTCTGAAATGGGGAGTAGATTTAGGGTTAGGGGTGGAATTCGGGGAATGTAAAAGATCACCCAACTGA 666 0.4114 MAEEQGYNGLEEGSPLQLVNPTVPTIQNIVSTVNLDCALDLKKIAQQARNAEYNPKRFSAVIMRIREPKTTALIFASGKMVCTGAKNEQQSKLAARKYARIIQKLGFPAAKFKDFRIQNIVASCDVKYTLGLELLAFELRPFSTYEPEIFPGLIYRMKQPNIVFLIFVSGKIVLTGAKAREEIYTAYEKMHPVLARFRKILKWGVDLGLGVEFGECKRSPN* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1608 221 Hamap TATA-box-binding protein [tbp]. 20 200 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 SUPERFAMILY TATA-box binding protein-like 20 108 - -
Lja1g1608 221 CDD TBP_eukaryotes 23 197 IPR033710 GO:0003677|GO:0006352
Lja1g1608 221 Gene3D - 31 117 IPR012295 -
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 141 156 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 26 41 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 69 87 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 160 176 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 117 133 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PRINTS Transcription initiation factor TFIID signature 50 69 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 114 196 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 24 105 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 SUPERFAMILY TATA-box binding protein-like 111 199 - -
Lja1g1608 221 Gene3D - 27 197 IPR012295 -
Lja1g1608 221 PANTHER TATA-BOX BINDING PROTEIN 17 202 IPR000814 GO:0003677|GO:0006352
Lja1g1608 221 PANTHER TATA-BOX-BINDING PROTEIN 2 17 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1608 Lja-Chr1 17410299 17412811 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1608 K03120 - oeu:111391891 291.197