Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1606 ATGGCCACTCCACAAGCACAAACGGCACCGCTTCAAGACCGAGTCGCAATCGTCACCGGCTCCTCCCGCGGAATCGGTCGAGAAATCGCGATTCACCTCGCTTCACTCGGTGCCCGACTCGTCATCAACTACACCTCCAACTCGGACCAAGCCAACTCAGTCGCCGCCCAGATCGATGCCGGCTCCGCCACCTCACGAGCCATCACCGTCAAAGCCGACGTCTCCGACCCAGACCAGGTGAAATCCCTGTTCGACTCCGCCGAGCAGGCCTTCGACTCGCCGGTTCACATCCTCGTCAACTCCGCCGGCGTCATCGACAGCACGTACTCCACCATAGCGGACACCACGGTGGAGACCTTCGACCGCATCATGAGCGTGAACGCGAGAGGGGCGTTCCTGTGCGCGAAGGAGGGCGCGAACCGCGTGAAGCGCGGCGGTGGAGGGAGGATCATCCTGCTGACGACGTCGCTTGCGGCGGCGCTGAAGCCGAAATACGGCGCGTACACGGCGTCGAAGGCGGCGGTGGAGGCGATGGCGAAGATCCTGGCGAAGGAGCTGAAGGGGACGGGGATCACGGCGAACTGCGTGGCGCCGGGGCCGGTTGCGACGGAGATGTTCTATGAGGGGAAGACGGAGGAGATGGTGCAGAAGGCGATTGATGAGAACCCGTTGTGTAGGCTCGGTGAGACCAAGGATATTGCACATGTTGTTGGGTTCTTAGCCAGTGATGCTGGTGAATGGGTCAATGGTCAAGTGGTTCGTGTCAATGGTGGCTATGTTTAG 783 0.613 MATPQAQTAPLQDRVAIVTGSSRGIGREIAIHLASLGARLVINYTSNSDQANSVAAQIDAGSATSRAITVKADVSDPDQVKSLFDSAEQAFDSPVHILVNSAGVIDSTYSTIADTTVETFDRIMSVNARGAFLCAKEGANRVKRGGGGRIILLTTSLAAALKPKYGAYTASKAAVEAMAKILAKELKGTGITANCVAPGPVATEMFYEGKTEEMVQKAIDENPLCRLGETKDIAHVVGFLASDAGEWVNGQVVRVNGGYV* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1606 260 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 3 260 - -
Lja1g1606 260 Gene3D - 2 259 - -
Lja1g1606 260 Pfam Enoyl-(Acyl carrier protein) reductase 20 259 - -
Lja1g1606 260 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 3 260 - -
Lja1g1606 260 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 259 IPR036291 -
Lja1g1606 260 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 199 - -
Lja1g1606 260 CDD THN_reductase-like_SDR_c 11 260 - -
Lja1g1606 260 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
Lja1g1606 260 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Lja1g1606 260 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1606 Lja-Chr1 17400410 17401863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1606 3 258 Acyl Lipid Metabolism Gene Families AT1G24360 29.572 3.87e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1606 K00059 - gmx:100809416 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1606 1 17400410 17401863 Lja1g1606 1 17400410 17401863 ECH