Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1588 ATGCAATCGCATCTTCTGTTAGGATCCATCTCCGTCGCACAATACGGCGGCGCCGCCGATTCCAACCCCTTCTTCTCCGCCACGCTGCCGAGTCCTCCTCGCCGGCGGCCCTCACTCATCACAGCAGCCTCATCCTCATCCTCCTCCTCCTCTTCCGCTGCTGCAATCAACGCCGGCCTCAATCATTACACCGTGCTTGGCGTCGCCCACACCGCCACTGCCGTCGAGATCAAACGTGCTTATCGCCTCCTGGCTCGCAAGTATCACCCTGATGTTAGCAAGGATTCAGGCGCAGCTGAATTGTTCAAGAGCATCCGTTATGCGTATGAAGTACTTTCGAATGAAGCAACGAGAATTCAGTATGATCGGGAACATCAATTGGGTCAAAAGCCTTACAGGGAAAAATGGAGTTACAGCTACAGCCCTGAATATGAAGATCAGGAAAGAATCTATAGGTGGGCCAACCTGAGGAAGAAAAGGCAGGGTGAAAGAGTTTGGGAGCATTACAATGCGGATGAAAGCTACTACAGTGAAACAGATGAGGAGGAAGATGAAGATGAAGAAAATTTAGAAGAAGAGAGGGGCTCTTTTGTTGAAGTGCTTAGATCAGCATTCATGTCACTGTTCTTGTTGCAGACGTTTGGATCCCGCCTCTCCCTTACGTTTAGCAGTTTGACAGCATTGTTTGATAAGAAATTAGACTCCGGCTATAAAATTGGTTATCTAATAGCATGGATTTTGGGTGGAAGGGGTGGCATATTGCTAACATTGTGCCTGTCGTTCGCAAGTTGGGTTTGCGGGAAAACAAGTAGTAGTGCAGTTGCCCTAGTTATGGTAGCCATGTGGGTTGGCTCCTACCTTGCAAGGTATGCACCACTTCCCCAAGGTGCTCTGTTAACGCTTCTCTACATGTCCATTAAGCTACAATCTGACCATATGTGA 942 0.4873 MQSHLLLGSISVAQYGGAADSNPFFSATLPSPPRRRPSLITAASSSSSSSSSAAAINAGLNHYTVLGVAHTATAVEIKRAYRLLARKYHPDVSKDSGAAELFKSIRYAYEVLSNEATRIQYDREHQLGQKPYREKWSYSYSPEYEDQERIYRWANLRKKRQGERVWEHYNADESYYSETDEEEDEDEENLEEERGSFVEVLRSAFMSLFLLQTFGSRLSLTFSSLTALFDKKLDSGYKIGYLIAWILGGRGGILLTLCLSFASWVCGKTSSSAVALVMVAMWVGSYLARYAPLPQGALLTLLYMSIKLQSDHM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1588 313 ProSitePatterns Nt-dnaJ domain signature. 102 121 IPR018253 -
Lja1g1588 313 ProSiteProfiles dnaJ domain profile. 61 125 IPR001623 -
Lja1g1588 313 SMART dnaj_3 60 117 IPR001623 -
Lja1g1588 313 SUPERFAMILY Chaperone J-domain 60 132 IPR036869 -
Lja1g1588 313 Pfam DnaJ domain 61 122 IPR001623 -
Lja1g1588 313 PRINTS DnaJ domain signature 63 81 IPR001623 -
Lja1g1588 313 PRINTS DnaJ domain signature 81 96 IPR001623 -
Lja1g1588 313 PRINTS DnaJ domain signature 97 117 IPR001623 -
Lja1g1588 313 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 301 - -
Lja1g1588 313 MobiDBLite consensus disorder prediction 26 50 - -
Lja1g1588 313 Gene3D DnaJ domain 44 141 IPR036869 -
Lja1g1588 313 CDD DnaJ 61 114 IPR001623 -
Lja1g1588 313 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1588 Lja-Chr1 17220738 17223201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1588 47 124 Miscellaneous Gene Families AT1G79030 39.506 2.37e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1588 - - gmx:100791619 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1588 1 17220738 17223201 Lja1g1588 1 17220738 17223201 ECH