Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1577 ATGGATCCAAACCAAGTAGCTCTCATCCTCGGCCCTGATTCATCTCATTTAGAATCCCTAATTTCAAACTTCATCTCCACCGGCAACGAGCAACGTTCTCAGGCCGAAACTCTCTTCAATCTCTGCAAACAAACCCACCCCGATTCCCTCATCCTCCGTCTCGCTCAGCTTCTCCACTCTTCCCCCAACCCCGAAACCCGAACCATGGCCACCATCCTCCTCCGCCGCCACCTCACGCGCCACCACGATGATTCCTTCCTCTGGCCTCACCTCTCCCCACCCACGCGCTCTACCCTCTGCTCCCTCCTCCTCTCCTCGCTCCACCGCGAGCCGCAGAAGTCTATCTCCAAGAAGCTATGCGACACCGTTTCTGAACTTGCCTCTGCTTTGCTCCCTGATGACCCCGCCGCCTGGCCGGAGCTGCTGCCGCTTTTGTTCCAGTGGGTCACCTCGCCGGACCCCAGGCTGCAGGAAATTGCGCTGCTTGTGTTTGCTCAGTTGGCTCATTATATTGGTGAAACCCTAGTACCTCAATTGACCACGCTGCAATCTGTGTTCCTCCGCTGCCTGAGCTCCTCCACGTCGTCTGATGTCCGCATCGCCGCCCTCGCCGCTAGCGTCAACTTTGTCCAGTGCCTCTCTAGTCCTTCTGACCGGGATAGGTTGCAGGATTTGCTGCCCCTCATGATGCAGACATTGACAGAGGCACTGAATTCTGGTCAGGAGGCAACTGCGCAGGAGGCTCTCGAGCTCCTTATTGAGCTTGCAGGAACCGAGCCTAGGTTCCTGCGGAGGCAGATTGTCGATGTTGTTGGCTCCATGCTGCAGGTTGCTGAGGCCCCTTCCCTTGAGGAAGGAACGCGCCATTTAGCTATTGAGTTTGTCGTGACACTTGCTGAGGCGAGGGAGCGCGCCCCGGGGATGATGAGGAAGCTGCCGCAGTTTATCCAGAGGCTGTTTGGTGTGCTGATGAATTTGTTGCTGGATATTGAAGATGAGCCGGCTTGGCACGCCGCCGAGACTGAGGACGAGGTTGCTGGTGAGACCAGTAATTATGGATTTGGGCAGGAGTGTTTGGATAGACTTTCGATTTCTTTGGGTGGGAACACGATAGTGCCAGTTGCTTCGGAGTTGTTGCCTGCTTACTTGGCTGCTCCTGAATGGCAAAAGCATCATGCTGCACTCATTGCACTTGCACAGATTGCAGAGGGTTGTTCAAAGGTGATGATAAAGAATCTGGAGCAAGTATTGTCAATGATTTTAAATTCATTTCACGATCCTCACCCTCGAGTGAGATGGGCAGCCATAAATGCAATTGGGCAATTGTCCACAGACTTGGGGCCAGACTTGCAGGTTAAATATCACCACTTAGTGCTGCCTGCATTAGCTGGAGCCATGGACGATTTTCAAAATCCCAGAGTACAGGCTCATGTGGCTTCTGCCGTGCTGAACTTCACTGAAAATTGTACCCCAGATATCCTAACACCTTATTTAGATGGGATTGTGAGCAAACTTCTCGTACTTCTGCAGAATGGGAAGCAAATGGTTCAAGAAGGGGCATTGACAGCATTAGCATCAGTTGCTGATTCTTCACAGGAGCAATTTCAGAAATACTATGATGCTGTTATGCCATACTTAAAAGCTATTTTGATGAATGCAAATGATAAGACAAATCGTATGCTTCGTGCCAAAGCAATGGAGTGCATTAGTTTGGTAGGAATGGCTGTTGGAAAGGAGAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTTCAGCAATCTCAACTGGAGGCTGACGATCCTACTGCAAGCTACATGTTACAAGCATGGGCACGGCTTTGCAAATGCCTTGGGCAGGATTTTCTCCCATATATGAATTTTGTCATGCCTCCTTTGCTCCAGTCTGCACAACTTAAGCCTGATGTGACCATTACATCAGCAGATTCTGATGCTGAATTTGATGAAGATGATGACAGCATTGAAACAATCACTCTCGGGGATAAAAGGATAGGCATTAAAACCAGTGTCTTGGAGGAGAAGGCGACTGCTTGTAACATGCTATGCTGCTATGCTGATGAATTGAAGGAAGGATTTTTCCCATGGATTGACCAGGTTGCTTTCACATTGGTTCCTCTTCTTAAGTTTTACTTCCATGAAGAAGTCAGGAAGGCAGCAGTTTCAGCTATGCCGGAACTGTTGTCCTCGGCAAAATCAGCTGTAGAGAAGGGACAATCACAGGGTCGTGATGAGACTTACGTAAAACAGTTGTCTGATTATATAATTCCAAATTTGGTGGAATCTTTACATAAGGAGCCAGAAGTAGAAATTTGTGCAAACATTTTGGACGCACTGAATGAATGCATACAGGTATCTGGATCACATCTAGATGAAAAGCAAGTTAGGAGCATTGTTGACGAGATTAAACAAGTCCTTACTGCCAGTTCATCAAGAAAACATGATAGAGCAGATAGGGCCAAAGAAGAGGATTTTGATGCTGAAGAAAGAGAACTTCTCAAGGAAGAAAATGAGCAAGAAGAAGAACTTTTTGATCAAGTTGGTGATTGCTTGGGGACTTTGATAAAAACATTCAGGGCATCTTTTTTGCCTTTCTTTGATGAGCTTTCGTCATACCTAACACCTATGTTTGGTAAAGATAAAACCCCAGAAGAAAGAAGAATTGCCATTTGTATATTTGATGATGTTGCTGAGCACTGTCGTGAAACAGCTCTTAAGTATTATGATTCGTACCTTCCATTCTTGCTTGAAGCTTGCAATGATGAATGTTCAGATGTTCGACAGGCAGCTGTTTATGGGGTTGGTGTTTGTGCTGAGTTTGGTGGATCTGTTTTCAAACCCCTTGTTGGAGAGGCTCTCTCAAGGTTAAATGCTGTTATAGGGCATCCCAATGCACTACATTCAGATAATGTAATGGCATATGACAATGCTGTTTCAGCTCTTGGAAAAATATGCCAGTTCCATCGTGATAGCATAAATGCAACACAGCAGGTTGTTCCTGCCTGGTTAAGTTGCTTGCCTCTAAAAGGTGATTTAATTGAGGCTAGGGTTGTGCATGATCAACTGTGTTCAATGGTTGAAAGATCTGATAGAGAACTTCTAGGCCCCAACAATCAATATCTTTCAAAAATTGTTGCAGTTTTTGCTGAGATTTTATGCGCGGGAAATAGTCTGGCAACTGAACAAACCGTTAGTCGGATGATTAATTTATTGCGGCAGCTTCAACAAACTTTGCCACCTTCTACCCTTGCTTCAACCTGGTCATCCTTGCAGCCCCAGCAACAGCTTGCCTTACAGTCAATCCTATCATCTTAG 3342 0.4683 MDPNQVALILGPDSSHLESLISNFISTGNEQRSQAETLFNLCKQTHPDSLILRLAQLLHSSPNPETRTMATILLRRHLTRHHDDSFLWPHLSPPTRSTLCSLLLSSLHREPQKSISKKLCDTVSELASALLPDDPAAWPELLPLLFQWVTSPDPRLQEIALLVFAQLAHYIGETLVPQLTTLQSVFLRCLSSSTSSDVRIAALAASVNFVQCLSSPSDRDRLQDLLPLMMQTLTEALNSGQEATAQEALELLIELAGTEPRFLRRQIVDVVGSMLQVAEAPSLEEGTRHLAIEFVVTLAEARERAPGMMRKLPQFIQRLFGVLMNLLLDIEDEPAWHAAETEDEVAGETSNYGFGQECLDRLSISLGGNTIVPVASELLPAYLAAPEWQKHHAALIALAQIAEGCSKVMIKNLEQVLSMILNSFHDPHPRVRWAAINAIGQLSTDLGPDLQVKYHHLVLPALAGAMDDFQNPRVQAHVASAVLNFTENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEQFQKYYDAVMPYLKAILMNANDKTNRMLRAKAMECISLVGMAVGKEKFRDDAKQVMDVLMSLQQSQLEADDPTASYMLQAWARLCKCLGQDFLPYMNFVMPPLLQSAQLKPDVTITSADSDAEFDEDDDSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAFTLVPLLKFYFHEEVRKAAVSAMPELLSSAKSAVEKGQSQGRDETYVKQLSDYIIPNLVESLHKEPEVEICANILDALNECIQVSGSHLDEKQVRSIVDEIKQVLTASSSRKHDRADRAKEEDFDAEERELLKEENEQEEELFDQVGDCLGTLIKTFRASFLPFFDELSSYLTPMFGKDKTPEERRIAICIFDDVAEHCRETALKYYDSYLPFLLEACNDECSDVRQAAVYGVGVCAEFGGSVFKPLVGEALSRLNAVIGHPNALHSDNVMAYDNAVSALGKICQFHRDSINATQQVVPAWLSCLPLKGDLIEARVVHDQLCSMVERSDRELLGPNNQYLSKIVAVFAEILCAGNSLATEQTVSRMINLLRQLQQTLPPSTLASTWSSLQPQQQLALQSILSS* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1577 1113 Pfam Interferon-related developmental regulator (IFRD) 483 621 IPR007701 -
Lja1g1577 1113 Pfam Importin repeat 6 781 884 IPR041389 -
Lja1g1577 1113 SMART TOG_3 365 606 IPR034085 -
Lja1g1577 1113 Pfam HEAT repeats 378 481 - -
Lja1g1577 1113 SUPERFAMILY ARM repeat 684 1088 IPR016024 -
Lja1g1577 1113 Coils Coil 831 851 - -
Lja1g1577 1113 PANTHER BNAC09G37860D PROTEIN 10 1112 - -
Lja1g1577 1113 PANTHER IMPORTIN BETA 10 1112 IPR040122 GO:0006606
Lja1g1577 1113 SUPERFAMILY ARM repeat 13 821 IPR016024 -
Lja1g1577 1113 ProSiteProfiles HEAT repeat profile. 416 454 IPR021133 -
Lja1g1577 1113 Pfam HEAT repeat 921 948 IPR000357 GO:0005515
Lja1g1577 1113 Pfam Importin repeat 283 373 IPR041653 -
Lja1g1577 1113 Gene3D - 13 1112 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1577 Lja-Chr1 17123836 17135480 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1577 K20222 - gmx:100797431 1894.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1577 1 17123836 17135480 Lja1g1577 1 17123836 17135480 ECH