Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1570 ATGGCTAAAATCCCCTTCTTATTGGTGGGGCTTTGGCTGCTAGGTAGCTGGACAAGTTTGTTGGAGGCAGAATACATGAAGTACAAGGACCCTAAACAATCAATTGATACTCGAGTTCAGGATCTTATTACCAGAATGACTCTTGAGGAGAAAATTGGTCAAATGTTGCAGATTGAGCGCAAGTATGCATCTGTTGATGTCCTCAAGAACTATTTTATTGGGAGTGTAATGAGTGAGGGAGGAAGTATGCCAGCTCCAAAGGCTTCTGCTGAAAACTGGATTGATATGGTTAATGAATTTCAGAAGGGTGCTTTATCATCCCGGCTTGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACGGTACTGTTTATAAAGCAACTATTTTCCCCCACAATATTGGGCTAGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGTAACTGCTCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTGTAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGCGAAGATCCTAAAGTAGTTCAAGATATGACTGAAATCATATCAGGATTGCAAAGGGACGTCCCTGATAATCTTCCAAAGGGTGTCCCTTATATTGCTGGAAAAGAAAAGGTTATAGCTTGTGCTAAGCACTATGTGGGTGATGGTGGAACAATCAATGGGATTGATGGGAACAACACTGTTATAGATAGAGATGGATTAATGAGAGTTCACATGCCCGGCTACTTTAGCTCAATTAGCAAAGGTGTGGCAACCATAATGGTCTCTTACTCCAGTTGGAATGGAATAAAAATGCATACTAACCATGACATGATCACTGGCTTTCTCAAGAACACTCTGCATTTTAAGGGCTTTGTTATTTCAGATTTTGAGGGTATTGATAGAATAACCTCTCCACCTCATGCAAACTTCACTTATTCGGTTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGATTCCAAAGTTCTTCACAGAATTCATCAATGATCTAACCATATTGGTGAAAAATAAGCTCATTCCGATGAGTAGAATTGATGATGCAGTGAAAAGAATTTTGTGGGTTAAGTTCATGATGGGTATTTTTGAGAACCCATTCGCTGATTACAGCTTGGTCGGATATTTGGGGATTCAGAAGCACAGAAAATTGGCTAGGGAAGCAGTAAGGAAATCACTGGTCCTTCTAAAAAATGGTATATCTGCTGAGAAGCCAATATTGCCTCTTACTAAAAAGGTACCAAAAATACTTGTAGCTGGAACCCATGCTGATAATCTAGGATATCAATGTGGTGGTTGGACCATTGAATGGCAAGGAGTCAGCGGCAACAATCATCTTGAAGGGACTACAATTCTCACAGCTATAAAAAACACTGTTGATCCAGAGACCACTGTGATCTACAAGGAGAACCCTGATACTGAATTTGTCGAGTCCAATGGATTTTCTTACGCCATAGTTGTAGTAGGAGAGCATCCTTATGCTGAAATGGAAGGTGACAGCATGAACTTGACAATCCCCAGCCCTGGTCCTGAGACAATAACAAATGTTTGTGAAGCCATAACATGTGTGGTTATTATTATTTCCGGGCGCCCTCTAGTTATTGAACCGTATCTTGCTTTAATAGATGCACTTGTTGCTGGTTGGCTTCCTGGTAGTGAAGGGCAGGGTGTGGCTGATGTTCTATATGGTGACTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAAGTGTTGATCAGCTACCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCCAACCTACTAAGGCCATTTACTCCGAGTAG 1896 0.4167 MAKIPFLLVGLWLLGSWTSLLEAEYMKYKDPKQSIDTRVQDLITRMTLEEKIGQMLQIERKYASVDVLKNYFIGSVMSEGGSMPAPKASAENWIDMVNEFQKGALSSRLGIPMFYGIDAVHGHGTVYKATIFPHNIGLGATRDPELVKRIGAVTALEVRATGIQYVYSPCVAVCRDPRWGRCYESYSEDPKVVQDMTEIISGLQRDVPDNLPKGVPYIAGKEKVIACAKHYVGDGGTINGIDGNNTVIDRDGLMRVHMPGYFSSISKGVATIMVSYSSWNGIKMHTNHDMITGFLKNTLHFKGFVISDFEGIDRITSPPHANFTYSVEAGVSAGIDMFMIPKFFTEFINDLTILVKNKLIPMSRIDDAVKRILWVKFMMGIFENPFADYSLVGYLGIQKHRKLAREAVRKSLVLLKNGISAEKPILPLTKKVPKILVAGTHADNLGYQCGGWTIEWQGVSGNNHLEGTTILTAIKNTVDPETTVIYKENPDTEFVESNGFSYAIVVVGEHPYAEMEGDSMNLTIPSPGPETITNVCEAITCVVIIISGRPLVIEPYLALIDALVAGWLPGSEGQGVADVLYGDYGFTGKLPRTWFKSVDQLPMNVGDPHYDPLFPFGFGLSTQPTKAIYSE* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1570 631 Gene3D - 21 395 IPR036962 GO:0004553|GO:0005975
Lja1g1570 631 Pfam Glycosyl hydrolase family 3 C-terminal domain 412 621 IPR002772 GO:0004553|GO:0005975
Lja1g1570 631 Pfam Glycosyl hydrolase family 3 N terminal domain 47 373 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 Gene3D - 397 623 IPR036881 GO:0004553|GO:0005975
Lja1g1570 631 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 412 621 IPR036881 GO:0004553|GO:0005975
Lja1g1570 631 PRINTS Glycosyl hydrolase family 3 signature 132 151 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 PRINTS Glycosyl hydrolase family 3 signature 294 312 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 PRINTS Glycosyl hydrolase family 3 signature 108 124 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 PRINTS Glycosyl hydrolase family 3 signature 224 240 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 PRINTS Glycosyl hydrolase family 3 signature 178 194 IPR001764 GO:0004553|GO:0005975
Lja1g1570 631 SUPERFAMILY (Trans)glycosidases 25 411 IPR017853 -
Lja1g1570 631 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 5 631 - -
Lja1g1570 631 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 5 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1570 Lja-Chr1 17074603 17078645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1570 26 626 Glycoside Hydrolase AT5G20950 69.218 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1570 K05349 - gmx:100779642 1121.3