Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1569 ATGGAAGTAGCTATTTCTCCACAAGTACAGAAGCAAAATTTGCAGACTACAGGTCGCAAAACTGTATGTGCTGGATCCCAGAAAGATTTGTGGCATGTTGTGCGAGAAGGATCTCTGAATGATGTGGAGTTGGCCTTGGCATTACTGAAAAAGAGTGGGGGTAATATCAATGTCAGGAACACCTTTGGGCTGACTCCTCTTCATGTTGCAACTTGGAGAAACCACATTCCCATTGTAAGAAGTCTTCTTGCAGCTGGTGCAGATCCTGATGCCCGGGATGGAGAATCAGGATGGAGTAGCCTTCACAGGGCTCTACATTTTGGTCATCTTGCTGTTGCAAGCACCCTTCTCCAGCATGGTGCCTCTATTATGTTGGAGGATTCTAAATCTCGAATCCCTGTAGATCTCTTATCTGGCTCTGTATTTCAGATTTTTGAAAATGAACACAGTTCAGTGGCTTCTGAGGTTTTTAGTTGGGGGAGCGGTGCCAATTATCAGCTCGGAACTGGAAATGCGCATATTCAAAAGCTGCCGTGCAAAGTTGATTCACTCAATGGTTCATCCATAAAGCTGATTTCTGCATCGAAGTTCCATAGTGTGGCACTTACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGGGGGGGCCGTCTGGGACATCCGGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACTCCTCGCCAGGTGACTTCTGGTTTGGGGTCCCGCAGAGTGATGGCAATTGCTGCTGCTAAGCATCATACAGTGATTGCTACTCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGATACCCTTCTGTTGATACACAACCCACGCCTCGTAGAGTATCTTCTTTGAGGTCGAAAATTGTTGCTGTTGCTGCAGCAAATAAGCACACGGCTGTAGTTTCTGATTTGGGTGAAGTTTACACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCTCATGTAGTTGAATCCTTAAAAGGGAAGACTTTAACCACAGTTTCTGCTGCAAAATATCACACAGTTGTATTAGGATCTGATGGAGAGGTATACACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTGATTACTAGGAACTTAAAGAAAAGTGGAAGCACTCCTTTAAGGTTTCATTGCAAGGAGCGACTTCACATTGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCTGATCTTAGATGCAAACAGTTATATGCTATGTGTGGAAGAAATATGGTGAACATATCTGCTGGAAAGTACTGGACTGCAGCAGTTACAACTACAGGTGATGTTTACATGTGGGATGGGAAGAAAGGTAAAGATAAGCCACTTGTTGCTACTCGGTTGCATGGCGTAAAGAAGGCTACTTCAGTTTCAGTTGGTGAAACACATTTACTGATTGTGGCTTCCCTCTATCATCCTGTCTACCCTCCCAATGTGATTGATAATTCTCAGAAGCTCCAGTTGAATAACAGGGATGATATGGAAGAGTTAAATGAAGATATTTTATTTGACGATATGGATTCCATTAATATGAAATGTACTGTACAAAATGATGCTTTAAAGCAGAGATCTATACCCAGCTTAAAAAGCCTTTGTGAAAAGGTAGCAGCGGAGTGTCTGGTGGAGCCACGGAATACCTTGCAAATGCTTGAGATAGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATCGTCATGCGCAACCTTGATTATATATTTACAGTTTCCTCACATGCTGTAGCTAGTGCCTCACTGGATGTTTTAGCTAACCTTGAGAAGTTGCTAGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGTCTCCCTACTCCAACTGCTATGCTCCCTGTTATCATTAACAGTGAAGAGGATGTTAGCGAGACAGAGTTTTCAAGGACTTGTGACAAACCCATGAAAATATCTGCGCTGACATTGGAGAAAGTTGAAAGACAAGATTCCTTTTTACTGCCCAAGGATGATCCCAGTAACGTCTCCAAAGTTGTTCGGGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGCTAAGCAGTCTAAAGGACATCTTCTTGATGACCAGCAGATTGCTAAGCTTCAATCCAAGTCAGCACTTGAGAGCTCACTTGCAGAGCTAGGTTTTCCTGTTCAGACTTCACAGAATAATGAATCATCTTCTACATTACTAGAAGGGAAAGGTAGTAAGAAAGGTAAATTATCCAAAAAACAAAGAAGAAAGAGCAGCAAATCAACCATAGAGCAGACAGAAATAGAATCTGCTTATTATAAAAGTGAAGCAACTCCTAAATCTGAGGACTTGTTTGACATTGACATCATGACGGTTCCTAATTCGAAGGCGGAAGATGATGCAATGTCTGAACATTCCATTACAGAACAAGGCTCAAAAGATTTAGCTTTTGTTGTACAGAAGAAAGATGCTTTAGAGTTGCTGAAAGATAAGGGTCAGTCACCAAAGGTTACTAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGAGGAAGCCCCAAAAGAGATGGCACCCCCTCCTCCACCCACGCCAAAAAATGATGTTCCTGCATGGGGTGGGGCCAAGTTTATAAAGGGCCCTGCTTCGCTGCGTGTAATCCAGGATGAACAGAGCAAAATAAAGGGAAACAAGCTTGTTGTGAGTACTAATAAGGTGGAAGATCTTTCTGATTTTGGCAGTGGAGGGAAAATAAAGTTGAGTTCATTTCTTCCTTCTAGCCCAATACCTGTTGCCTCAACTCACAGTTCTCAGGCAGCTGAAGAAATAAGCACCCCTCCTTGGGCTGCTTCAGCAACCCCTCCTCAACCCTCAAGGCCGTCTTTAAGGCACATCCAAATGCAACAGGGAAAGAAACAACAAACCCTTTCCAATAGTCCAAAGACTAAAACTTCTGGGTTTGCTATTGCTACTGGCCAAGGTTCACCATCTGAAGCAACTGGGGTTAGCCGCTGGTTCAAGCCTGAAGCTGAAACACCATCCTCCATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTCAAGATTGTCAGAAAGCAGCAAGTTTAA 3249 0.4361 MEVAISPQVQKQNLQTTGRKTVCAGSQKDLWHVVREGSLNDVELALALLKKSGGNINVRNTFGLTPLHVATWRNHIPIVRSLLAAGADPDARDGESGWSSLHRALHFGHLAVASTLLQHGASIMLEDSKSRIPVDLLSGSVFQIFENEHSSVASEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSSIKLISASKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVYTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTTVSAAKYHTVVLGSDGEVYTWGHRLVTPKRVVITRNLKKSGSTPLRFHCKERLHIVSIAAGMVHSMALTDDGALFYWVSSDPDLRCKQLYAMCGRNMVNISAGKYWTAAVTTTGDVYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNVIDNSQKLQLNNRDDMEELNEDILFDDMDSINMKCTVQNDALKQRSIPSLKSLCEKVAAECLVEPRNTLQMLEIADSLGADDLKKYCEEIVMRNLDYIFTVSSHAVASASLDVLANLEKLLDQRSSEPWSHRRLPTPTAMLPVIINSEEDVSETEFSRTCDKPMKISALTLEKVERQDSFLLPKDDPSNVSKVVRAIRKKLQQIEMLEAKQSKGHLLDDQQIAKLQSKSALESSLAELGFPVQTSQNNESSSTLLEGKGSKKGKLSKKQRRKSSKSTIEQTEIESAYYKSEATPKSEDLFDIDIMTVPNSKAEDDAMSEHSITEQGSKDLAFVVQKKDALELLKDKGQSPKVTKKKSKKGGLSMFLSGALEEAPKEMAPPPPPTPKNDVPAWGGAKFIKGPASLRVIQDEQSKIKGNKLVVSTNKVEDLSDFGSGGKIKLSSFLPSSPIPVASTHSSQAAEEISTPPWAASATPPQPSRPSLRHIQMQQGKKQQTLSNSPKTKTSGFAIATGQGSPSEATGVSRWFKPEAETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQQV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1569 1082 SUPERFAMILY RCC1/BLIP-II 398 507 IPR009091 -
Lja1g1569 1082 MobiDBLite consensus disorder prediction 964 982 - -
Lja1g1569 1082 Gene3D - 142 390 IPR009091 -
Lja1g1569 1082 Gene3D - 391 510 IPR009091 -
Lja1g1569 1082 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Lja1g1569 1082 SMART ANK_2a 62 91 IPR002110 GO:0005515
Lja1g1569 1082 SMART ANK_2a 96 125 IPR002110 GO:0005515
Lja1g1569 1082 SMART ANK_2a 25 58 IPR002110 GO:0005515
Lja1g1569 1082 SUPERFAMILY RCC1/BLIP-II 129 431 IPR009091 -
Lja1g1569 1082 MobiDBLite consensus disorder prediction 760 775 - -
Lja1g1569 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Lja1g1569 1082 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Lja1g1569 1082 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Lja1g1569 1082 Gene3D - 4 141 IPR036770 -
Lja1g1569 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Lja1g1569 1082 MobiDBLite consensus disorder prediction 887 912 - -
Lja1g1569 1082 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1080 - -
Lja1g1569 1082 Pfam Ankyrin repeats (3 copies) 42 127 IPR002110 GO:0005515
Lja1g1569 1082 MobiDBLite consensus disorder prediction 961 1051 - -
Lja1g1569 1082 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1080 - -
Lja1g1569 1082 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Lja1g1569 1082 MobiDBLite consensus disorder prediction 993 1038 - -
Lja1g1569 1082 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Lja1g1569 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Lja1g1569 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Lja1g1569 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Lja1g1569 1082 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Lja1g1569 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Lja1g1569 1082 SUPERFAMILY Ankyrin repeat 39 136 IPR036770 -
Lja1g1569 1082 MobiDBLite consensus disorder prediction 760 797 - -
Lja1g1569 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Lja1g1569 1082 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1569 Lja-Chr1 17052746 17062683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1569 33 136 Acyl Lipid Metabolism Gene Families AT5G53470 33.962 8.07e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1569 K24810 - gmx:100814063 1736.47