Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1568 ATGCAGACTAGGACTGTTCAGGTGAAGCAGGTTTCAGATCTAGTTGGTGAAAGAGAGATTCATGAGTTTTTCTCTTTTTCTGGTGAAATCGAGCACGTTGAGATCCTCAGTGAATATGGGAAATCAAAGACTGCATTTGTGACATTTAAAGATGCCAAAGCGCTTGAAATTGCATTGTTGTTATCGGGAGCAACCATAGTAGACCAGATTGTGAGTATAACTCCAGTTGAGAACTATGTACCAAATCGTGAGATGCTGGAAGTAACGGTGGTGGAAAATGCTATAAATGTTGCTCCTGAACATGTCTCGTTGAATATTGAGGAGGAGAAACCCAGCTCACCCAGCTCTGTCAATGGAAGAGTGTATCTTAGTAGAGCACAAGTTGCAGTTAGTAGTATGCTGGCAAAAGGTTCTGCAATAAAGCAAGATGCCGTAAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTTCTAATGCATCTGCAAAGGTGATTTCTTTTGACAAGAGAGTTGGATTGACAGAGAAATTGACAGTTGGCCTTTCTGCAATGAATGAGAAAGTGAAGTCTGTGGATCAGAGGCTTCATGTTTCTGATAAAACAATGGCAGCTATATTTGCTGCTGAAAGGAAGTTGAATGATACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACATCATGGTTAAATGGAGCTTTTAGCAAGGTGGCAAAGGTTGGACATGTTGCTAGTACTAGGACTAGAGAGAAGTTTAATATGGCTGTTTCAAACTTGACAGCAAAGGATTCTCCAGTGGCTGCTGTATAG 819 0.409 MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGRVYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTVGLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREKFNMAVSNLTAKDSPVAAV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1568 272 Gene3D - 1 74 IPR012677 -
Lja1g1568 272 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 270 - -
Lja1g1568 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Lja1g1568 272 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 270 - -
Lja1g1568 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lja1g1568 272 SUPERFAMILY RNA-binding domain, RBD 2 79 IPR035979 GO:0003676
Lja1g1568 272 SMART rrm1_1 5 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1568 Lja-Chr1 17044259 17047849 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1568 - - gmx:100779011 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1568 1 17044259 17047849 Lja1g1568 1 17044259 17047849 ECH