Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1550 ATGAGCCACGACGGCAGCGTCGATCATCACCTGGCGGAGCTTTCCACCTCCTCACACCGCATTCCCTCCAACGACGACTTCCACTTCTACTACAAATTCAACGAATTCAAACGCCCGCTTGAAGAAATCGCGATGCGGACGCAGTCGATGCTGACCAGAATCGGCTCCTCCGAGCACATATGGGGCAGAGGCTCTGCGTTTCCCGGCGACATTGACGACGCTTACGAGTGGGTTGTCAACGCCAACGACGACGTTTTGGAGCTTGTTGAGGAGATTCTGGATGAGTTTCGGAGGATTAAGAAGGAGGAGGCGGAGGCTGAGATTTGGGAAAATGGGGTTGGGAGGAAGAAGAAGAGTAAAGGGGCGAGTTGTTTGGAATTGGAGGGTCTTGACCTGGAAAATGGAACTGGGTTGGAGTTGAAGGATAAGGCGTCGAAGGTGTCGTTTCACGAACCGACGATAAGTAAGCCCCAGTATAGATACAACCTTGAAGTTGATAATGCAAACAAGCCTTTTCAGCATGTTTTGTTGGAGAAGAGTGATGATGGCCAGAGGTTTATTCATCCACTGGAGAAACTCTCGGTTTTGGATTTTGTAGACAAAGATCTTGAGAATCTTGTACCAGTAAAGCCTCCCCCACTTGAATGCACCCCTTTCAAGCTTGTGGAGGATGTCAAAGGGTTGAAGGAGTTGGCTACTAAGCTGTATTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTCCAAGGATTGACCTGCTTGATGCAAATCTCAACCAGAACTGAAGATTTTATCGTAGATACTCTGAAGCTCCGCAATCATGTTGGGCCGTATCTGAGGGAAGTCTTCAAGGACCCCAAGAAGAAAAAGGTCCTGCATGGAGCAAATCGAGACATTGTGTGGCTGCAACGGGACTTTGGCATCTATGTTTGTAATATGTTTGATACTGGCCAGGCTTCTCGAGTGTTAAAATTGGAGAGATATAGTCTGCAACATCTTTTACAGCACTATTGTGGGGTTACTGCAAACAAAGAATACCAGAATGCAGATTGGAGAGTGCGCCCTCTTCCTGATGTTATGCTTAGATATGGAAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATTGAGCTATATGCATTGCCTAAGGATTCTGAAAGTTCTGATAATCCTCTGTTGGAGGTATACAAGCGCAGTTATGATATCTGCATGCAGCTATATGAGAAAGAGCTTTTGACAGAAGACTCGTACCTTCGTATAAAAGGGTTGCTAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCAGGCCTTTGTGAATGGCGCGACACTGTTGCTCGTGCAGATGATGAGAGTACTGGGTATATATTGCCAAACAAAATTATTCTTGAAATTGCTAAGCAGATGCCTGTCATTACAAGCAATCTAAGGCGATTGGTAGGAAAGTCAAGGCTCCCATATGCTGAGCGCAATCTTGATATAATTGTCAACATTGTCAGACATTCTATGCAAAATGCTACTGCCTTTGAAGAAGCTGCGCAACGTTTAAAAGAAGAACATGCAGCGAATGTGGCAAAAGCAGCAGCAGCAGCAGAAGCAGCTGTTAAGGATGGAACTGAAGCTCCTGGATCTCATACGCCAAACTTGGAGGTTGAATGTGCAGAAAAAGGATGCAGTGGAAATGAAAATGCCATCAGTGTTGATATCTCAGAGATGTCTCTGATTTCTTCTGACTTGGAAGAATATTTTGAGGATGAAGATCTACAGGGACAAGAATTAATTAAATCTGATTTTCTCACTTCAGAGCTCCCATGCAGTAGTCTCACTGTTCTAAAGAAGAATGGGAAGGATGCAAATGTTGGTGCACCCTCTACAGCAAAGGGTAATGGAGCAAATGGTCAGGTGCTAAAAAAGCCTATGGGTGCTTTTGATGCAACAGTAATGGGAAATTCAGCTTCAGAAAGGAAGCTTGATAAAAAGGGCAAGAAAATCAAGCTAGAACAGATTAGATCATCAGCCAATCTTCCTTCCGGTTCATTTTTGGGCAACAGTGATAAGTCCACCTCCACCCGGAATGGGACTGTAACCGTAGACTCCGATTCAGACTTGGAGGATATGATGCAGAATAACCTATAA 2166 0.4441 MSHDGSVDHHLAELSTSSHRIPSNDDFHFYYKFNEFKRPLEEIAMRTQSMLTRIGSSEHIWGRGSAFPGDIDDAYEWVVNANDDVLELVEEILDEFRRIKKEEAEAEIWENGVGRKKKSKGASCLELEGLDLENGTGLELKDKASKVSFHEPTISKPQYRYNLEVDNANKPFQHVLLEKSDDGQRFIHPLEKLSVLDFVDKDLENLVPVKPPPLECTPFKLVEDVKGLKELATKLYSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRNHVGPYLREVFKDPKKKKVLHGANRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQHLLQHYCGVTANKEYQNADWRVRPLPDVMLRYGREDTHYLLYIYDLMRIELYALPKDSESSDNPLLEVYKRSYDICMQLYEKELLTEDSYLRIKGLLGAGFNAQQLAIVSGLCEWRDTVARADDESTGYILPNKIILEIAKQMPVITSNLRRLVGKSRLPYAERNLDIIVNIVRHSMQNATAFEEAAQRLKEEHAANVAKAAAAAEAAVKDGTEAPGSHTPNLEVECAEKGCSGNENAISVDISEMSLISSDLEEYFEDEDLQGQELIKSDFLTSELPCSSLTVLKKNGKDANVGAPSTAKGNGANGQVLKKPMGAFDATVMGNSASERKLDKKGKKIKLEQIRSSANLPSGSFLGNSDKSTSTRNGTVTVDSDSDLEDMMQNNL* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1550 721 SMART 35exoneu6 219 388 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lja1g1550 721 CDD Rrp6p_like_exo 215 407 - -
Lja1g1550 721 Pfam HRDC domain 441 493 IPR002121 GO:0003676
Lja1g1550 721 PANTHER 3'-5' EXONUCLEASE 642 702 - -
Lja1g1550 721 Gene3D - 145 426 IPR036397 GO:0003676
Lja1g1550 721 ProSiteProfiles HRDC domain profile. 438 519 IPR002121 GO:0003676
Lja1g1550 721 Pfam PMC2NT (NUC016) domain 15 97 IPR012588 GO:0000176|GO:0006396
Lja1g1550 721 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 7 595 IPR045092 GO:0000175|GO:0000467
Lja1g1550 721 Coils Coil 509 529 - -
Lja1g1550 721 SUPERFAMILY Ribonuclease H-like 154 419 IPR012337 -
Lja1g1550 721 SMART hrdc7 438 518 IPR002121 GO:0003676
Lja1g1550 721 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 642 702 IPR045092 GO:0000175|GO:0000467
Lja1g1550 721 SUPERFAMILY HRDC-like 423 514 IPR010997 GO:0000166|GO:0044237
Lja1g1550 721 Gene3D HRDC domain 427 522 IPR044876 -
Lja1g1550 721 PANTHER 3'-5' EXONUCLEASE 7 595 - -
Lja1g1550 721 MobiDBLite consensus disorder prediction 684 721 - -
Lja1g1550 721 Pfam 3'-5' exonuclease 221 384 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1550 Lja-Chr1 16806524 16817966 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1550 K12591 - gmx:100804872 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1550 1 16806524 16817966 Lja1g1550 1 16806524 16817966 ECH