Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1543 ATGCAGTGTCCATGCCATCCTTGTTCGGTTGTTCCCCTAAAGCGCAACCCTCCGCTTCCTTGCCCGTCGTTCTGTTCGCCGGTGGAAATGGGGACTCTGGCGAGCTGCAGTTTCATGCCTCTGAACTCCGAGTTCCGGTCCAACCCGGTTCGACGCGACTTCAGGGAGAGGATTCACTGCCACGAGCTCAATAGACTCAAGGGAGGAGCTTGTTTCTTCGCTAACTCACACACATCGAAGCATCTCAATTTCGATAGGTTCAGGTGTTTTGCTACCAACGACAATGACAAGGACACTACCAATGGTGAAGAGGAAAGTGGTAACAACGATTCTAAACCAACGCCCCCCTCCACTTCTGAAGAGCCAGCTTTGTCGTCGCTTGGATCTGCGTACAAAAAATTTGAAGTTGATTATTCCAAACTTATGGAACTCGTTGGACCTCGGAGGGTTGATCCTGCTGACGTCAAGTTAATTAAGGAGAAGCTTTTTGGTTATTCATCCTTCTGGTTGACCAAAGAGGAGCCTTTTGGTTACCAACAAGAAGGCATTCTTTTCTTTGGGAATTTAAGGGGAAAGAGAGATGATGTATTTTCCAAATTCCAAAATCAGCTAGTTGAGGTCACAGGTGATAAGTACAACCTTTTTATGGTGGAGGAACCAAATTCAGATAGTCCTGATCCACGGGGTGGGCCACGTGTTAGCTTCATTTTGCTGCGTAAGGAGGTTTGTGAGCCAGAGCCAACAGCACCTTGGCAATATGTTTCTGCGACGTTGTTGTTCCTTCTAACTATTGTTTCTTCAGTGGTGCTAGGAGTTGATTCTCAGATTAACAAACTTCCACCAGAAGTTGTGGGTTACTTCACACATCCTGGTACTACTGAAGCCCCGGATAGGGAGTTGCTACTTCCATTTGTTGAGTCAGCTTTACCTTTAGCATATGTTGTAGCATATGGTGTCTTGGGCGTTCTTCTGTTCCATGAGGTTGGGCACTTTCTAGCAGCATTTCCTAAACAAGTAAAATTAAGCATTCCTTTCTTCTTGCCAAACCTCGCTACTGGCAGCTTTGGTGCTATTACTCAGTTTAAATCCATCGTTCCTGATAGAAGTACTAAAGTGGATATATCACTTGCGGGACCCTTTGCTGGTGCTGTATTATCATTTCTTATGTTTGCTGTTGGTATTCTTCTCTCATCAAATCCAGATGCAACAGGAGATTTGGTGCAAATTCCTAGCTTTATGTTTCAAAGTTCCTTGCTGCTTGGATTAATCAGTAGAGCAACTCTTGGTTATGAAGTAATGCATGCTGCAACAGTTGCAATTCACCCTCTTGTGATTGTAGGATGGTCTGGCTTAACCATACAAGCTCTGAACATGCTTCCAGTGGGGCGCCTTGATGGTGGCAGAGCAGTGCAGGGTGCTTTTGGAAAAAGTGCTCTATTGGGCTTTGGTTTGGCCACTTATACATTGCTTGGGTTGGGAGTGCTTGGTGGACCTCTTTCACTTGTTTGGGGATTCTGTGTTCTGATACTTCAGCGGACACCAGAGAAACCATGTTTAAATGATGTGACAGAAGTTGGAACATGGAGAAAGTCACTTGTGGGTGTTGCTATTTTTCTTGTTGTCTTAACTCTTCTTCCAGTTTGGGACGAGCTTGCAGAGGAGTTAGGTATAGGTCTTGTAAATACATTTTGA 1692 0.4498 MQCPCHPCSVVPLKRNPPLPCPSFCSPVEMGTLASCSFMPLNSEFRSNPVRRDFRERIHCHELNRLKGGACFFANSHTSKHLNFDRFRCFATNDNDKDTTNGEEESGNNDSKPTPPSTSEEPALSSLGSAYKKFEVDYSKLMELVGPRRVDPADVKLIKEKLFGYSSFWLTKEEPFGYQQEGILFFGNLRGKRDDVFSKFQNQLVEVTGDKYNLFMVEEPNSDSPDPRGGPRVSFILLRKEVCEPEPTAPWQYVSATLLFLLTIVSSVVLGVDSQINKLPPEVVGYFTHPGTTEAPDRELLLPFVESALPLAYVVAYGVLGVLLFHEVGHFLAAFPKQVKLSIPFFLPNLATGSFGAITQFKSIVPDRSTKVDISLAGPFAGAVLSFLMFAVGILLSSNPDATGDLVQIPSFMFQSSLLLGLISRATLGYEVMHAATVAIHPLVIVGWSGLTIQALNMLPVGRLDGGRAVQGAFGKSALLGFGLATYTLLGLGVLGGPLSLVWGFCVLILQRTPEKPCLNDVTEVGTWRKSLVGVAIFLVVLTLLPVWDELAEELGIGLVNTF* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1543 563 MobiDBLite consensus disorder prediction 95 125 - -
Lja1g1543 563 CDD S2P-M50_like_2 258 487 - -
Lja1g1543 563 MobiDBLite consensus disorder prediction 106 125 - -
Lja1g1543 563 PANTHER ZINC METALLOPROTEASE EGY1, CHLOROPLASTIC-RELATED 97 557 - -
Lja1g1543 563 PANTHER ZINC METALLOPROTEASE EGY1 97 557 IPR044838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1543 Lja-Chr1 16710475 16716515 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1543 K25380 - gmx:100808073 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1543 1 16710475 16716515 Lja1g1543 1 16710475 16716515 ECH