Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1541 ATGTATCTCCACCGCCACATCCTCACCAGAGCCTCCGTGCACCGCCGCCACTTCTCACAAGCCGCCGCCGCACTCCTCCACCCTCCGGAGCCGGAGCAGTTGACGTACCTTGAAGGCCTTCCGAGGCCGAACCCAAAGCACGACGAGACGATCCTCGCGATCCCTCGCAAAGAGTCCGGGTCGAACATCTCGGCGAAGGAGCGCAAAGCGGGGCGGGTCCCCGGCATCGTGTTCGAGCAAGAAGACGGCCAGCACGGTGGCAACAAGCGCCTCATCTCCGTCCGTAGAGACCAGATCAGGAAGCTCGTCACGCATCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCAACTCCATGTCCTCTCCGACTTCGACTCCGATGAGATCATTGAAAATGTTCGCGTTTTGCCCCACCAGATTCATTTGCAAGCTGGAACAGATGCACCGTTGAATGTCACCTTTTTAAGGGCTCCATCAGACGCATTGTTGAGAGTTGACGTTCCTCTTGTATACAGAGGAGACGATGTTTCCCCTGGGCTAAAGAAAGGTGCTTCTTTGAATACCATCAGAAGGACTGTTAAGTACTTATGCCCTGCAGACATTATTCCCCCATATATTGACGTGGATTTAAGTGAGATGGATGTGGGCCAAAAGTTGGTAATGGGAGATCTCATTGTTCATCCTGCACTAAAACTTCTTCACTCAAAAGATGAACCTGTATGTAAAATTATGGGCCAAAGGGTTTCTGAACAACAACCACCAAAGAAATCTAAGTAA 777 0.5225 MYLHRHILTRASVHRRHFSQAAAALLHPPEPEQLTYLEGLPRPNPKHDETILAIPRKESGSNISAKERKAGRVPGIVFEQEDGQHGGNKRLISVRRDQIRKLVTHLGRSFFLSRLFQLHVLSDFDSDEIIENVRVLPHQIHLQAGTDAPLNVTFLRAPSDALLRVDVPLVYRGDDVSPGLKKGASLNTIRRTVKYLCPADIIPPYIDVDLSEMDVGQKLVMGDLIVHPALKLLHSKDEPVCKIMGQRVSEQQPPKKSK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1541 258 Gene3D Ribosomal Protein L25; Chain P 50 157 IPR020056 -
Lja1g1541 258 Gene3D Ribosomal protein L25, beta domain 159 252 IPR037121 -
Lja1g1541 258 SUPERFAMILY Ribosomal protein L25-like 50 252 IPR011035 GO:0006412
Lja1g1541 258 Pfam Ribosomal protein TL5, C-terminal domain 164 245 IPR020057 -
Lja1g1541 258 PANTHER BNAA01G13300D PROTEIN 13 254 - -
Lja1g1541 258 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 13 254 - -
Lja1g1541 258 Pfam Ribosomal L25p family 53 154 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lja1g1541 258 CDD Ribosomal_L25_TL5_CTC 50 156 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1541 Lja-Chr1 16697756 16701156 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1541 K02897 - gmx:100779285 405.601