Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1539 ATGATCGTGAAGGGTGGGGATGATGCTGGTGGTGTTGGGTTTGGAGGAGGAGGAGGGAAATTGTTAAGGGGGTTTGGAAGCTTGATTAGGAGGAAGCAAGTTGATTCTGTTCATGTTAGGGGCCATGCTCAATTGGCTAGGAAGTTATCTGCTGTTGATCTTGTTGGAATCGGGGTTGGAGCTACGATAGGGGCTGGAGTTTATATTCTCATAGGAACAGTTGCTAGAGAGCAGGCAGGACCAGCACTCGTAATATCACTTCTTATTGCAGGAATAGCTGCTGCGCTATCAGCTTTGTGTTATGCAGAGCTTGCATGTCGATGCCCATCTGCAGGGAGTGCTTATCATTATACATACATATGCATTGGAGAAGGGGTTGCTTGGTTGGTTGGTTGGTCCCTAATTCTAGAATATACAATTGGTGCTTCGGCTGTTGCTCGTGGCATAACCCCGAATCTGGCCTTGTTTTTTGGTGGTCAGGAGAACCTACCTGTATTTTTGGCTCGTCATACCTTGCCAGGTCTTGGAATTGTGGTTGATCCATGTGCAGCTGCATTAATTCTTTTTGTTACCCTACTCTTGTGCCTTGGAATCAAGGAGAGCGCAATGGCACAATCTATTGTGACAACAGTAAATGTCATTGTCATGCTTTTCATCATTATAGTTGGTGGATATCTAGGTTTCACGTCTGGATGGGTTGGATATGAACTCCCTAGCGGGTATTTTCCATATGGAGTGAATGGAATGTTTGCTGGGTCCGCAATAGTTTTCTTTTCATATATTGGTTTTGATTCAGTGAGCAGCACCGCTGAGGAGGTAAAAAACCCTCAACGAGATTTGCCAATTGGCATATCAACTGCCTTAGCTATATGTTGCATTCTATATATGCTTGTAGCTGCAGTTATTGTTGGCTTAGTACCGTATTACGAGTTAAACCCTGATACCCCAATCTCCTCAGCATTTTCTAGCTATGGGATGGACTGGGCAGTGTATCTAATAACGACTGGAGCTGTCACTGCTCTTTTTTCCAGTTTGTTGGGTTCTGTTCTTCCTCAGCCACGAGTCTTTATGGCAATGGCTAGGGATGGTTTGTTACCCTCTTTCTTCTCAGACATCCACAGACGCACACAGATCCCTTTGAAAAGCACTATTGTTGTTGGTGTCTTTGCAGCAGCACTCGCATTCTTCATGGATGTTTCTCAGTTAGCAGGGATGGTTAGTGTGGGAACGTTGCTTGCATTTACCACCGTTGCAGTTTCAGTTTTGATAATCAGATATGTTCCACCTGATGAGGTACCCATTCCATCTTCACTTCTATCATCTGTTGATCCGTTAGTGAGCCATTCTGGTGGTGATACTGAGGAAGATAGGGCCATGAGCTCCGTAGATCTTTCTAATTATTATGAGAATAATCACCTACGTGACAAGTCAGAGTTTCTGCTTGGACATCCTTTAATCATAAAAGAAGTAACTAAAGATGAACAGATTGAGAAAAGTAGGCGCAAACTTGCTGCATGGGCCATAGCCTTTCTATGTATAGGGATTCTCATTGTTGCTGGTGCAGCTTCTGCTGAAAGTTGTCCCAGGATTTTGCGCTTCACATTGTGTGGAATGGGAGCAATTCTTCTTTTGTGCAGTTTAATTGTGCTGGCCTGCACAGAGCAAGACGATACAAGGCACAGCTTTGGACACTCAGGAGGTTTTGCTTGCCCATGTGTTCCATTCTTACCTGCTGCCTGCATTCTTATAAACACCTACTTACTAATTGATCTTGGAGCTGCTACATGGCTTCGAGTTTCTGTATGGTTGCTCATAGGAGTTCTTATATACTTGTTCTATGGCCGCACTCACAGCTCACTGTTAAATGCAATCTATGTTCCCTCAGCATATGCTGATGAGATCCATCGTTCTCAAGCAAATCATTTAGCCTAG 1932 0.441 MIVKGGDDAGGVGFGGGGGKLLRGFGSLIRRKQVDSVHVRGHAQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALVISLLIAGIAAALSALCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITPNLALFFGGQENLPVFLARHTLPGLGIVVDPCAAALILFVTLLLCLGIKESAMAQSIVTTVNVIVMLFIIIVGGYLGFTSGWVGYELPSGYFPYGVNGMFAGSAIVFFSYIGFDSVSSTAEEVKNPQRDLPIGISTALAICCILYMLVAAVIVGLVPYYELNPDTPISSAFSSYGMDWAVYLITTGAVTALFSSLLGSVLPQPRVFMAMARDGLLPSFFSDIHRRTQIPLKSTIVVGVFAAALAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEVPIPSSLLSSVDPLVSHSGGDTEEDRAMSSVDLSNYYENNHLRDKSEFLLGHPLIIKEVTKDEQIEKSRRKLAAWAIAFLCIGILIVAGAASAESCPRILRFTLCGMGAILLLCSLIVLACTEQDDTRHSFGHSGGFACPCVPFLPAACILINTYLLIDLGAATWLRVSVWLLIGVLIYLFYGRTHSSLLNAIYVPSAYADEIHRSQANHLA* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1539 643 Pfam Amino acid permease 49 431 IPR002293 GO:0016020|GO:0022857|GO:0055085
Lja1g1539 643 PANTHER CATIONIC AMINO ACID TRANSPORTER 4, VACUOLAR 22 636 - -
Lja1g1539 643 Gene3D Amino acid/polyamine transporter I 45 445 - -
Lja1g1539 643 Pfam C-terminus of AA_permease 568 618 IPR029485 -
Lja1g1539 643 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 22 636 - -
Lja1g1539 643 PIRSF AA_transporter 27 434 - -
Lja1g1539 643 PIRSF AA_transporter 495 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1539 Lja-Chr1 16679156 16686428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1539 25 643 Organic Solute Cotransporters AT3G03720 65.595 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1539 K13863 - gmx:100810218 1051.97