Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1536 ATGCTAGCATGCTCTAGCAGCACCCTCCATGGCCGTGCCACACTTCACCAACCCTCTCACTTCCTCCTCCCCAACCCGCCTCTCCTCTTCCCTACCCGCCGCTGCTACCGCTTCGCCGGCAAATGCAAGCTCCGTTCTCTCTTTCCCACCACCAAAGGTGGTCTCGGCGGCTTCGCTGTCAGAGCTTCCTTGGAGGATCCTTCGGTGGTTCCAGAGTCCGCCGTCGACGTTGGTGCCCCGCAACCGTACTCCGTGAAGATTCCTGTTGGTGACAGACATATTTTGGTTGAGACTGATCATATAGGAAGACAAGCAAGTGGTTCTGTTACAGTTACGGATGGGGAGACTATTGTGTACACAACTGTTTGTTTGGATGATGTTCCTAGTGAGCCATCAGATTTTTTCCCTCTTTCTGTGAATTATCAAGAGCGATTTTCAGCAGCTGGTCGCACTAGTGGAGGGTTTTTTAAACGAGAAGGAAAGACAAAGGATCACGAGGTGCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTTCTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGATTGCACTCCCCTGATTCTTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCGCTCTCAGAAGTGCCTATGTCAAAAACTGTTGCTGGAGTTCGAATTGGTCTTGTTGGTGATAAGTTTTTAGTAAATCCTACAACTGAGGAGATGGAAAACTCTGAGTTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTGAAGCTGTAGAAGTTGGTCAGGATGCTGTTCGAGCAATCTGTAAAGAGGTAGCAGCTTTGGTCAAGAAATGTGGGAAACCAAAGATGTTTGATGCCATCAAGTTGCCTCCTCCTGAGCTTTATAAACATGTTGAAGAAATCGCTGGTGATGAGCTGGTAAAAGTTCTTCAAATTAGAAACAAAATACCAAGGAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTATTAAGATACTTACAGAAAACGGGGTTGTCACAAATGATGCTACCCAAAGGAGTAATACCGAAACAATTGCGGAGATTCTTGAAGATGAGGATGAAGATGAGGAAGTTATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTGCTCGCAAACCAACCCCGTTATTTTCGGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTCACATCAAAGTTTTTAAGGAAGCGCATAGTAGAGGGGGGGAAAAGGAGTGATGGGCGGAAACCAAACGAAATACGTCCAATTAACTCTAGATGTGGGCTATTACCTAGAGCACATGGAAGCACTCTTTTTACAAGAGGCGAAACACAGTCACTAGCTGTTGTTACGCTTGGAGATAAGCAGATGGCACAACGGATAGACAATCTTATGGGTGTTGATGAATTCAAGAAGTTCTATCTGCAGTACTCCTTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCGCCAAGTAGACGAGAAATTGGTCATGGGATGCTTGCTGAGAGGTCCCTAGAACCAATTTTGCCTTCTGACAAAGATTTCCCTTACACTATACGTGTTGAGAGTACTATAACAGAAAGCAACGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTCAGCGATTGCTGGAATTGCGATGGGTATGGTACTGGACACGAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCAGACATAACTGGTTCTGAAGATGCGTCTGGAGATATGGATTTTAAGGTTGCTGGGAACGAACATGGCATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACTTTGCCCGTCATGAGAGAAGCACTTCTACAAGCTAGAGATGGCAGGAAGCATATACTTGGAGAGATGATGAATTGCTCGCCCCCTCCAGCAAAAATCCTTTCCAAGTATGCTCCTCTGATTCACATTATGAAGGTTAGGCCTGATAAAGTAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATCATTGAGGAGTCCGGAATAGAGGCTATTGATACAGATGATAATGGCACGGTGAAAATATTTGCAAGGGATTTGTCTAGTTTAGAGAGGTCTAAAGCTATGATTAGTAATTTGACAATGGTTCCGGCTATTGGCGATATATATAGGAACTGTGAAATCAAATCAATAGCTCCATATGGAGTTTTTGTAGAGATAGCTCCTGGACGAGAGGGACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGTTACCCAAGGCAGAAGATGTTTTCAAAGTGGGAGATCGTATTGATGTAAAGCTTATAGAGATAAATGACAAAGGACAGTTGCGTCTTAGTCACCGAGCTCTGCTTCCTGATACAGATCCAGACAATTCAGATTCAAATAGCCAAGCAAAAGATGGTATAGCTGAGGAGAAGATTGAACAACCTAAGGATAAGATTAACACTCCCAAAGGCGACTCATCTAAAAGGAGTTCAAGGGACGATTCGGCACTTCCATCAAAAAAGTTTATCAGGAGAATGGTCAGCCCTTCCCAGGATAAACCTGTCACTAACAAGGACAAGATAAAGAGGAGTAGCAACAAAGCAGAGTCTGACAAAGATGAAAGTAGTTTGGTTAGTGAAGAGGCGTAA 2769 0.4384 MLACSSSTLHGRATLHQPSHFLLPNPPLLFPTRRCYRFAGKCKLRSLFPTTKGGLGGFAVRASLEDPSVVPESAVDVGAPQPYSVKIPVGDRHILVETDHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPSMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKTVAGVRIGLVGDKFLVNPTTEEMENSELDLLLAGTDSAILMIEGYSNFLPEEKLLEAVEVGQDAVRAICKEVAALVKKCGKPKMFDAIKLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVIKILTENGVVTNDATQRSNTETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTARKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRKPNEIRPINSRCGLLPRAHGSTLFTRGETQSLAVVTLGDKQMAQRIDNLMGVDEFKKFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSDKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSAIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEHGITAFQMDIKVGGITLPVMREALLQARDGRKHILGEMMNCSPPPAKILSKYAPLIHIMKVRPDKVNLIIGSGGKKVKSIIEESGIEAIDTDDNGTVKIFARDLSSLERSKAMISNLTMVPAIGDIYRNCEIKSIAPYGVFVEIAPGREGLCHISELSSGWLPKAEDVFKVGDRIDVKLIEINDKGQLRLSHRALLPDTDPDNSDSNSQAKDGIAEEKIEQPKDKINTPKGDSSKRSSRDDSALPSKKFIRRMVSPSQDKPVTNKDKIKRSSNKAESDKDESSLVSEEA* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1536 922 CDD S1_PNPase 757 825 - -
Lja1g1536 922 Pfam 3' exoribonuclease family, domain 2 227 288 IPR015847 -
Lja1g1536 922 Gene3D - 73 307 IPR027408 -
Lja1g1536 922 MobiDBLite consensus disorder prediction 826 922 - -
Lja1g1536 922 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 415 827 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lja1g1536 922 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 81 829 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lja1g1536 922 ProSiteProfiles S1 domain profile. 757 826 IPR003029 GO:0003676
Lja1g1536 922 SUPERFAMILY Ribosomal protein S5 domain 2-like 84 222 IPR020568 -
Lja1g1536 922 SUPERFAMILY Ribosomal protein S5 domain 2-like 424 596 IPR020568 -
Lja1g1536 922 SUPERFAMILY Nucleic acid-binding proteins 750 831 IPR012340 -
Lja1g1536 922 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 73 891 - -
Lja1g1536 922 CDD RNase_PH_PNPase_2 450 678 - -
Lja1g1536 922 SMART S1_6 755 826 IPR022967 -
Lja1g1536 922 Pfam KH domain 692 748 IPR004088 GO:0003723
Lja1g1536 922 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 73 891 IPR012162 GO:0003723|GO:0004654|GO:0006402
Lja1g1536 922 MobiDBLite consensus disorder prediction 895 915 - -
Lja1g1536 922 Gene3D - 396 684 IPR027408 -
Lja1g1536 922 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 317 363 IPR036456 GO:0003723|GO:0006396
Lja1g1536 922 CDD PNPase_KH 687 747 - -
Lja1g1536 922 SMART kh_6 686 752 IPR004087 GO:0003676
Lja1g1536 922 SUPERFAMILY Ribonuclease PH domain 2-like 578 679 IPR036345 -
Lja1g1536 922 Gene3D - 757 828 IPR012340 -
Lja1g1536 922 MobiDBLite consensus disorder prediction 844 880 - -
Lja1g1536 922 Gene3D K Homology domain, type 1 685 756 IPR036612 GO:0003723
Lja1g1536 922 ProSiteProfiles Type-1 KH domain profile. 687 747 - -
Lja1g1536 922 SUPERFAMILY Ribonuclease PH domain 2-like 225 309 IPR036345 -
Lja1g1536 922 Pfam 3' exoribonuclease family, domain 1 92 222 IPR001247 -
Lja1g1536 922 Pfam 3' exoribonuclease family, domain 1 450 584 IPR001247 -
Lja1g1536 922 Pfam S1 RNA binding domain 764 826 IPR003029 GO:0003676
Lja1g1536 922 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 683 751 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1536 Lja-Chr1 16637352 16663298 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1536 K00962 - gmx:100785430 1379.77