Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1531 ATGGCTATGATGAACAACTTCAACATCACAACACAACCACAGCTCCTCCAAGTTCAAGTTCAACAACACAGTCTTCCATCCAATCACCCCATCAAGGCACAAGATTCAATCTTTCCTAACAAAACAACAGTGGCGGGACAAATAGTGAGAAGGGTCTTCCAGATTCTGTTCTACTTGCATCTGGTCCTGATTTCAGTTTTGGTGATTCTCCTCACCATCTATGGTCTTGTCTCAGATTCTCACACCCACCATTTTCATCCTAGGAAGTGGTACCCTCCACTTCTAGCATCAACAGTATGTGCTGGAATTCTTGGTTTTACATGGCAATGGATCATTTCCTGCCACCCCACAAAGGCATTCAAGGTAGCATTTTGGCTGAGTCCCCTGCTAACATGTGCAATGGGAATTCTGTTTGTGTGTATTGGCTCACCAGTGAGTCTTTCAGCTGGTGTGATTGCTTTGGTTTTTGCAGTTATTCAATCGTTATACGGTTGTTGGGTCAGTCCACGATTCGAATACGCCACCAGAATCTTGTCAGTTTCAATAGCTTCTCCTCCTGAAAAAACCCAAGGGTTAACCCTTTCATCAATCCTCATTAGTGTCCTTCTCTGCTTTTTTCTTGTGGCCGGGATCGGAGGCGCTAGAGCTCTTGAAAACAGAACCAAACTAGCACCCCTTTTCATCTTAGTGATCCTGCTGAGCCTGGGATGGAGTATGCAGTTTCTTAAGAATGCAATGCAAGTCACAATTTCAAGGGTCAAGTACGTGCATTTTGCTGGAGGAGCTGCTGAAATTGATACAAGAGTGGCAATTTGTGACACAATCAAGTACTTAACTGGAAGTGTTTGCATTGGATCCATCCTTGTCCCGATCTTCGGACTCTTCCGGGGCTTCGCGCGATCAATGAGTCTGATTGGAGGGCACACAGATGAGTTCATGTTCTCCTGTGTTAGTTGCTACATGGGGATTGCATCTGTCCTTGTGAACTTTGGGAACAGGTGGGGTTTTGTGCATGTTGGAGTTTACAACAAGGGGTTTGTGCAGGCTTCTTCTGATGTTTGGGAAATGTTCAATAGAGTTGGATTGGAGCAACTGATAGACTTAGATCTCACTGGAGTGTTCTGTTTCTTTAGTGGGGTTGCTGCAGGTGCAATTTGTAGTCTGGTGAGTGGAATTTGGAGCCTTGCAATGCATAAGAGCTATGCAATTGAAGTATCCATTTATGGTTTCCTCATTGGCTATTTCATGTGTCGGTTGGCGATTGCGTGGCCACAAGCATGTGTTTCAGCTTACTATGTTGCTTACGCAGAGAACCCACAGAGCACTCAATTTGACTCCACTATTCCAGTACGCTTGGAGCAGCTTCACAGATCTCAAGCTTTGCAAAGATTCTGA 1395 0.4487 MAMMNNFNITTQPQLLQVQVQQHSLPSNHPIKAQDSIFPNKTTVAGQIVRRVFQILFYLHLVLISVLVILLTIYGLVSDSHTHHFHPRKWYPPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLSAGVIALVFAVIQSLYGCWVSPRFEYATRILSVSIASPPEKTQGLTLSSILISVLLCFFLVAGIGGARALENRTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVAICDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQLHRSQALQRF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1531 464 PANTHER F20H23.27 PROTEIN-RELATED 29 459 - -
Lja1g1531 464 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 29 459 IPR007603 GO:0022857|GO:0055085
Lja1g1531 464 Pfam Plasma-membrane choline transporter 151 439 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1531 Lja-Chr1 16566039 16574773 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1531 - - lja:Lj1g3v3981460.1 898.656