Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1516 ATGGCTGCCAAGCTGCTTTTGCAGAGAAGGCTCCTCAGGTTCTTGACACTGTCACCACCCTCATTACACTCCTCTTCTTCTGGTTACATTAATGGGGCACGGTTGCTTTCTCTGAAAGTATCAGAAATAGTGGGTCTCTTCAAGGGTAATGCACTTCTTTCTCCTTTTTCAACTTCTTCTAGAAGCTTCTGCTCTCGGGGTTCCAATCTTCTGGATGAGTCTGAAGTCCCCACGGCCGTTGATTACCGGTCTCTAATGGAGGAGAGTGAATACCACAGCCTGGCTGAGTCCACAATACATAACCTACAGGAAAAATTAGAGGACTATGGAGACTCTATTGACATAGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTAAAACTTGGCGATCTGGGCACTTATGTATTGAACAAACAAACACCAAATAGACAGATTTGGCTGTCATCTCCAGTGAGTGGTCCATCAAGGTTTGATTGGGATCAGGATACTAAAGCTTGGATTTACAGGCGGAAGAAAGTAAACCTGTATAAGCTTTTAGAAGCCGAGTTGGAGCAGTTGTGTGGCAAACCTTTTGTTCTTTCCTGA 594 0.4394 MAAKLLLQRRLLRFLTLSPPSLHSSSSGYINGARLLSLKVSEIVGLFKGNALLSPFSTSSRSFCSRGSNLLDESEVPTAVDYRSLMEESEYHSLAESTIHNLQEKLEDYGDSIDIDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQIWLSSPVSGPSRFDWDQDTKAWIYRRKKVNLYKLLEAELEQLCGKPFVLS* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1516 197 CDD Frataxin 86 193 - -
Lja1g1516 197 PANTHER FRATAXIN 56 195 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 SUPERFAMILY Frataxin/Nqo15-like 77 193 IPR036524 GO:0008199|GO:0016226
Lja1g1516 197 ProSiteProfiles Frataxin family profile. 86 194 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 ProSitePatterns Frataxin family signature. 138 152 IPR020895 -
Lja1g1516 197 Pfam Frataxin-like domain 86 192 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 TIGRFAM FeS_CyaY: iron donor protein CyaY 88 195 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 Gene3D Frataxin/CyaY 79 197 IPR036524 GO:0008199|GO:0016226
Lja1g1516 197 SMART Frataxin_Cyay_2 86 197 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 PRINTS Frataxin signature 139 154 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 PRINTS Frataxin signature 86 104 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 PRINTS Frataxin signature 124 139 IPR002908 GO:0008199|GO:0016226
Lja1g1516 197 TIGRFAM mito_frataxin: frataxin 90 187 IPR017789 GO:0004322|GO:0005739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1516 K19054 - gmx:100815916 249.21