Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1515 ATGGGCGGCGCCGCCCCAAGGTTCCTTTTCCTCCTCACCACTCCCCTCCCTCCCCTCCTCCGCCGCAACCTCCGCCTCTTCTCTTCCTCTCTCTCCTCCCATTTCCACCACCGCCTCTCTTCCTCTTCCTCTTTCTCACCCTCTTCTCCTTCTCTCACTCCCAAACTCAAACCCAAAGCTTCCCAGCACCAACAACAACAAAGCCACCTTCACACCCAACCTCCCTCCTCCCTCACCACCCACCCATGGCCCGAATGCTCCAGATTTCTCTCCCACATCTCCTCCGTCGGCTACGCTACCACCGCTCCCGAAACCGGCTTCCCGGCGACCGGGGAGTTGTCGCAGCGCGAGGTCAGTGCCTGCTTGGCGTTCGCCCGCGACCGACCGAACCTTCTCCGGTTGCTTTCGATGAGAGATATTGCGGTTGTGGTTGAACATGGCACTCCCTTTCTGTTTCCAGATGCTGAGGATTCCATGAGGAAGATGAAGTCTCTTGTTCAATATGGTGACTCCACTGTGTTGGATACTGATAGGCCAAATATGGTTGACCTAATGAAATTTCTGCTGAGTTATGCAAGTAACCCATCGGCCACTTCAGAAAGTAACAGTCTCTATAACAGGGATCTTGTTGAATCATCTGTCAGAAATCTGTTTGGTGAACTTTTCAAGCTGAGTTACAATGCACCTGGACCTAACTCTTTTGATTCAGTGCAAAATCAAATGCCTGGTAGATTTGAACGGGCAATGCCTCCTGGTCAAAGAATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTTGCAAGAAATACTAAATGTCTTGATTGTGAGGAAGCTAGACCAAAAAGACAACTAACTGGAGGAGAATGGGAATGTCCTCAGTGTGATTTCTGTAACTACGGGAGGAACGTGACTTGCTTAAGGTGTGACTGCAAGCGGCCTGGCCAAATATCGTTGGGTGCCACCAATCCCGTATCACATGTGGGGTATGGAAATGGAAACAATTCTGATATGTCAGATGTTGATGCTAGGTTAGCTGCTAATGAAGAGAAGGCGCAGCGTTGGTTTAACAAGGTTTCTCAACTAGACAGTAATGCTGATATTAACAGTGTGATGGCAGATGAGGATTTTCCGGAAATAATGCCGTTAAGGAAAGGAGTTAACAGATTTGTTGTGAGCACAAGGAAAACTCCATTGGAGAGGAGGTTGGGCAATGCTCAATACAAGAGTAACTTGGGAGATAATGACATTCCCGGGGTTGAGGATTTTAAAGCTGGCCTTCCCCAATCCGACAAGAAAAACATTGGTGCAGAACAAGATACCAGTAGATACGGCCCACCTTCAATTGCTAGCAATGCTTCAAATTTCAAAGATGTGAAAGGGAGCAACAGTAGTTCCATGCCTCCCTTTCCATTTTCTTCAGATGCGCTTCCCCAAAAGTCTGAGAACTTGCGAGCAGAGGATAGAAAAACCGCGCCATTGGGCGCCAATGTTGGATATGTCAGTCCTGGTGGTGACAATCCACACTTTTCTAATAACACTACAAGTGAAAATGTGGAAAAGGAGAAAGAGCAAGCTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGTGGAGCTGCATGATGCTTCAGATATGACAAGTGCGGTATCTGATGAGGATTTCCCTGACATAATGCCTATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGACCGCTCCTTGACATCACCGGCATACAAGAGACGTTTGGCCGTGGAGCAATCTGGCAACACCAACTTTGTCCCCTTTGTCCCTTTCCCCCCAGATTACTTTGCCAAGAAGGACAAGCAACAACAGGAAGATGGAACAGAATCAACAGTTAGGTCCAGTGTTGAATCATCTTCAATATCGGATGATGCTAGTGCTAGATCTGGACAGAGTCCAAAACCTTCTGAACAGGGCTCAAATAACAACAACCAAGTTGGTTCTATTCATGGGGAAACTAGCAGTAGATATTCAAGCCAGAGTTTCAATCATGTGCCAAATTTCTCTGGGAGTTCATCCCCAGGCTCAGCATCTGAGAACCAGAAGCCAAATTTGAGAGTGAGTTCATCTGCAGGCTCACTGTCTGATAACCAGAATGTCAGAGCAGGATGGACAGGAAAGAGCTTGGAGGGGTCGGCCGTGAAGCCAAATTTGAGAGGGAGTTCATCTGCAGGCTCAGTGTCTGATAACCAGAATGTCAGAGCAGAATGGACAGGAAAGAGCTTGGAGGGGTCGGCCGTGAAGGAACCGGATCCTTTGGACATGTCAGAGGAGGCAAAGGCGGAGAGGTGGTTCCGTCGTGTCTCGCAGATTAAGGATATATCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGGAAAGGGGTGAATAGATTTGTTGTGAGCAAGAGGAAAACACCATTGGAAAGAAGGTTGACATCTCAGCAGTACAAAAGAAATCTTCCAATTGTGAACTCGGATCCGGTTAAAAGAGAAAATGAAGGTAGCTAA 2556 0.4703 MGGAAPRFLFLLTTPLPPLLRRNLRLFSSSLSSHFHHRLSSSSSFSPSSPSLTPKLKPKASQHQQQQSHLHTQPPSSLTTHPWPECSRFLSHISSVGYATTAPETGFPATGELSQREVSACLAFARDRPNLLRLLSMRDIAVVVEHGTPFLFPDAEDSMRKMKSLVQYGDSTVLDTDRPNMVDLMKFLLSYASNPSATSESNSLYNRDLVESSVRNLFGELFKLSYNAPGPNSFDSVQNQMPGRFERAMPPGQRIEMKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVTCLRCDCKRPGQISLGATNPVSHVGYGNGNNSDMSDVDARLAANEEKAQRWFNKVSQLDSNADINSVMADEDFPEIMPLRKGVNRFVVSTRKTPLERRLGNAQYKSNLGDNDIPGVEDFKAGLPQSDKKNIGAEQDTSRYGPPSIASNASNFKDVKGSNSSSMPPFPFSSDALPQKSENLRAEDRKTAPLGANVGYVSPGGDNPHFSNNTTSENVEKEKEQAEKSERWFRKVVELHDASDMTSAVSDEDFPDIMPMRKGENRFVVSKKKDRSLTSPAYKRRLAVEQSGNTNFVPFVPFPPDYFAKKDKQQQEDGTESTVRSSVESSSISDDASARSGQSPKPSEQGSNNNNQVGSIHGETSSRYSSQSFNHVPNFSGSSSPGSASENQKPNLRVSSSAGSLSDNQNVRAGWTGKSLEGSAVKPNLRGSSSAGSVSDNQNVRAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVSQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYKRNLPIVNSDPVKRENEGS* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1515 851 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 850 - -
Lja1g1515 851 MobiDBLite consensus disorder prediction 506 532 - -
Lja1g1515 851 ProSitePatterns Zinc finger RanBP2-type signature. 295 314 IPR001876 -
Lja1g1515 851 ProSitePatterns Zinc finger RanBP2-type signature. 262 281 IPR001876 -
Lja1g1515 851 MobiDBLite consensus disorder prediction 449 482 - -
Lja1g1515 851 MobiDBLite consensus disorder prediction 624 721 - -
Lja1g1515 851 MobiDBLite consensus disorder prediction 414 482 - -
Lja1g1515 851 ProSiteProfiles Zinc finger RanBP2 type profile. 291 320 IPR001876 -
Lja1g1515 851 MobiDBLite consensus disorder prediction 615 773 - -
Lja1g1515 851 MobiDBLite consensus disorder prediction 731 754 - -
Lja1g1515 851 Gene3D - 251 288 - -
Lja1g1515 851 Gene3D - 289 321 - -
Lja1g1515 851 ProSiteProfiles Zinc finger RanBP2 type profile. 258 287 IPR001876 -
Lja1g1515 851 MobiDBLite consensus disorder prediction 38 81 - -
Lja1g1515 851 Pfam Zn-finger in Ran binding protein and others 259 286 IPR001876 -
Lja1g1515 851 PANTHER ZINC FINGER PROTEIN 3 850 - -
Lja1g1515 851 SMART zf_4 260 284 IPR001876 -
Lja1g1515 851 SMART zf_4 293 317 IPR001876 -
Lja1g1515 851 MobiDBLite consensus disorder prediction 825 851 - -
Lja1g1515 851 SUPERFAMILY Ran binding protein zinc finger-like 253 287 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1515 Lja-Chr1 16406857 16412369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1515 120 324 EF-hand Containing Proteins AT1G55040 38.428 7.99e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1515 - - cam:101505193 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1515 1 16406857 16412369 Lja1g1515 1 16406857 16412369 ECH