Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1511 ATGTTAAATCTCAAAACATGTTATAGTTCCTTTCCTTCAAGAATGAAAATGGCGGTGTTATCATCTTCTTCTTCTTCTTCTTCTCCTACACTGCTTCCACCTCGTCCTTCAATTTCTCAACCAAAACGCTACCCTATCCACACCCTCAAACCCCACACTCGTTCTCGCCACACCCTCTCCGCCGCCGCACCCGCCCCCTCACTCTTCTCCACCACCAGCACCAGAGAAGGTCTTGACACTGTCAACATTGCCGAAGATGTCACCCAGTTGATTGGGAATACACCAATGGTGTACCTTAACAAAGTTACAGAAGGTTGTGTGGCTAATATTGCTGCAAAACTTGAGTCCATGGAGCCTTGTAGAAGTGTCAAGGACAGAATTGGGTATAGCATGTTAGCTGATGCTGAAGAGAGTGGAGCAATATCCCCAGGGAAGACTACTTTAGTTGAACCAACAACTGGAAATACAGGACTTGGCATTGCTTTTGTCGCTGCAATGAAGGGATACAAACTTATAGTCACAATGCCTGCTTCCATAAATATTGAGAGGAGAATACTTTTACGTTCATTTGGTGCCGAGGTTGTTCTGACTGATGCAGAGAAAGGACTGAAAGGGGCAGTTGACAAAGCTGAAGAAATTCTTCACAGAACACCCAATGCTTACATGTTTCGACAGTTCGATAACATGAATAACACAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGACGATACCATGGGTAATGTTGATGTATTGGTTGCTGGGATTGGAACTGGTGGTACTGTTACTGGCACTGGACGTTATCTGAAGGTGATGAACAAAAGAATAAAGGTGGTTGGGGTTGAACCTGCAGACAGAAGTATAATATCAGGAGACAATGCGGGATTCATACCAAGCATTTTGGATATCGAACTGCTTGATGAAGTCATCAAGGTTACCAGTGGTGAGGCAATTGACATGGCGAGGAGATTAGCATTAGAAGAAGGTTTATTGGTTGGGATTTCGTCAGGAGCTGCAGCAGCTGCTGCCCTAAGTTTAGCAAGACGGCCTGAGAATTCTGGAAAACTTATTGTGGTTATTTTTCCTAGTTTTGGTGAGAGGTATATTTCCACTCCCCTCTTCAATTCTATCTATGAAGAGGTTCAGAAAATGTAA 1161 0.4393 MLNLKTCYSSFPSRMKMAVLSSSSSSSSPTLLPPRPSISQPKRYPIHTLKPHTRSRHTLSAAAPAPSLFSTTSTREGLDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANIAAKLESMEPCRSVKDRIGYSMLADAEESGAISPGKTTLVEPTTGNTGLGIAFVAAMKGYKLIVTMPASINIERRILLRSFGAEVVLTDAEKGLKGAVDKAEEILHRTPNAYMFRQFDNMNNTKIHFETTGPEIWDDTMGNVDVLVAGIGTGGTVTGTGRYLKVMNKRIKVVGVEPADRSIISGDNAGFIPSILDIELLDEVIKVTSGEAIDMARRLALEEGLLVGISSGAAAAAALSLARRPENSGKLIVVIFPSFGERYISTPLFNSIYEEVQKM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1511 386 Pfam Pyridoxal-phosphate dependent enzyme 87 364 IPR001926 -
Lja1g1511 386 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 113 131 IPR001216 GO:0006535
Lja1g1511 386 Gene3D - 125 227 IPR036052 -
Lja1g1511 386 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 83 379 IPR036052 -
Lja1g1511 386 PANTHER CYSTATHIONINE BETA-SYNTHASE 55 386 - -
Lja1g1511 386 Gene3D - 89 372 IPR036052 -
Lja1g1511 386 CDD CBS_like 92 372 - -
Lja1g1511 386 TIGRFAM cysK: cysteine synthase A 88 376 IPR005859 GO:0004124|GO:0006535
Lja1g1511 386 TIGRFAM cysKM: cysteine synthase 88 376 IPR005856 GO:0004124|GO:0006535
Lja1g1511 386 PANTHER S-SULFO-L-CYSTEINE SYNTHASE (O-ACETYL-L-SERINE-DEPENDENT), CHLOROPLASTIC 55 386 - -
Lja1g1511 386 MobiDBLite consensus disorder prediction 22 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1511 Lja-Chr1 16375152 16379961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1511 79 386 Miscellaneous Gene Families AT3G03630 79.545 1.25e-167 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1511 K22846 - gmx:100819100 550.436