Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1504 ATGGCCACCGTCCTTAGAACTCCCACCTTCCGGCCACCACCACCTCCGCCGTCCGCCTCCAAGTCCCCGAAACCCTCCTACGTCGCCGTTTCTTCCACGTGCAGGCGGAGGCCGTCACTCTTCACCTCTCTCCGATTCTCCACCAGTCCCTCACTGCGGTTCGCGAGGTTCGTGCCTTTTGCTTTTGGCGGAGACACCGAGGCTCCTCAAGTTCAAGAACCAGGGGTTCAGGTTGCGGACTCTTCAGATGGTGCTGTTGGTGTGGAGGATAGTATAGATGATAATGAGTTGAGTGATGCTGGTGAAATACCTGCTTCACCTCTCTTACTATTACTGCAATCTTACAAAGAAGCACTAGTTAATAATGATGAAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCTTCGAAGATGAGAAAGTAGGTCTTGAAGGGAAAATAGCTTCTTTATCTGAAGAGTTATCAGTAGCAAAAGATCGGATTCTAAGGATTGGTGCAGACTTTGACAATTTCAGGAAGAGGACTGAGAGAGATCGCCTTTCACTGGTCTCAAATGCTCAGGGGGAAGTCGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAAGCTCAGATTAAGGTGGAGACAGAAGCTGAGGAGAAAATAAGCAACAGCTATCAGAGTATATATAAACAGTTCATTGAAATTCTAACCTCACTTGGAGTTGAACCAGTGGAGACAGTTGGAAAATTCTTTGATCCATTGCTACATGAAGCAATTATGCGAGAGGATTCTACTGAATTTGAGGAAGGCATCATAATCCAAGAATTCAGAAAGGGTTTTCAACTTGGTGACCGCCTCTTACGGCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCTAAGCCTGAAAGTGAAGCACCGCAAGAAGAACAAGTTACAAGTGAAATCAGTAAAGAGAATGAGGGCGGTACAGAAACAGAGTCTGCTTGA 987 0.46 MATVLRTPTFRPPPPPPSASKSPKPSYVAVSSTCRRRPSLFTSLRFSTSPSLRFARFVPFAFGGDTEAPQVQEPGVQVADSSDGAVGVEDSIDDNELSDAGEIPASPLLLLLQSYKEALVNNDEVKVAELESSLKSFEDEKVGLEGKIASLSEELSVAKDRILRIGADFDNFRKRTERDRLSLVSNAQGEVVESLLPVLDNFERAKAQIKVETEAEEKISNSYQSIYKQFIEILTSLGVEPVETVGKFFDPLLHEAIMREDSTEFEEGIIIQEFRKGFQLGDRLLRPSMVKVSAGPGPAKPESEAPQEEQVTSEISKENEGGTETESA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1504 328 Gene3D Head domain of nucleotide exchange factor GrpE 238 293 IPR009012 GO:0006457
Lja1g1504 328 MobiDBLite consensus disorder prediction 311 328 - -
Lja1g1504 328 Coils Coil 120 161 - -
Lja1g1504 328 PANTHER GRPE PROTEIN HOMOLOG 33 308 - -
Lja1g1504 328 MobiDBLite consensus disorder prediction 290 328 - -
Lja1g1504 328 ProSitePatterns grpE protein signature. 249 292 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 PANTHER GRPE PROTEIN 33 308 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 MobiDBLite consensus disorder prediction 8 22 - -
Lja1g1504 328 PRINTS GrpE protein signature 246 261 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 PRINTS GrpE protein signature 191 206 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 PRINTS GrpE protein signature 273 292 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 PRINTS GrpE protein signature 163 179 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 239 295 IPR009012 GO:0006457
Lja1g1504 328 Hamap Protein GrpE [grpE]. 93 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 CDD GrpE 159 292 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g1504 328 Pfam GrpE 134 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Lja1g1504 328 Gene3D - 122 236 IPR013805 -
Lja1g1504 328 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 238 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1504 Lja-Chr1 16258261 16263751 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1504 K03687 - gmx:100820521 496.123