Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g1450 | ATGACTGCCCAGTCCCAAGAAGAGCTTCTCGCTGCTCATCTCGAACAGCAAAAGATCCATGATGATGAGCCTGTAGTTGAGGATGATGATGAGGACGATGATGATGAGGATGACGATGATGAGGATGATGACAACATTGAAGGACAAGAGGGTGATGCATCTGGTAGGTCAAAGCAGACCAGAAGCGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTTACAGGTGTCAGTCGTGTGACAGTCAAGAAGAGCAAGAATATTGTGTTCGTCATCTCAAAACCAGATGTTTTCAAGAGCCCAACTTCAGACACATACATTATATTTGGTGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACCCAGGCAGCAGAGCAGTTCAAGGCTCCTAATTTGGGCAATGTAGGTTTGAAGCCTGAATCCTCTGGTGTTGCTCAGGATGAAGAGGATGTTGATGAGAGTGTAGATGTGGACGAGACCGGTGTAGATCCCAAGGATGTAGAGTTGGTGATGACTCAAGCTACCGTGTCAAGACCAAAGGCTGTTAAAGCTCTCAAAGCTGCAAATGGCGACATTGTGGCTGCCATTATGGAGCTAACAAATTGA | 624 | 0.4551 | MTAQSQEELLAAHLEQQKIHDDEPVVEDDDEDDDDEDDDDEDDDNIEGQEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNIVFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLGNVGLKPESSGVAQDEEDVDESVDVDETGVDPKDVELVMTQATVSRPKAVKALKAANGDIVAAIMELTN* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g1450 | 207 | Pfam | NAC domain | 63 | 118 | IPR002715 | - | |
| Lja1g1450 | 207 | Gene3D | - | 168 | 205 | - | - | |
| Lja1g1450 | 207 | CDD | UBA_NAC_euk | 170 | 206 | - | - | |
| Lja1g1450 | 207 | PANTHER | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED | 3 | 207 | IPR016641 | GO:0005854 | |
| Lja1g1450 | 207 | Gene3D | - | 69 | 122 | IPR038187 | - | |
| Lja1g1450 | 207 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
| Lja1g1450 | 207 | ProSiteProfiles | NAC A/B domain profile. | 60 | 125 | IPR002715 | - | |
| Lja1g1450 | 207 | PANTHER | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN | 3 | 207 | - | - | |
| Lja1g1450 | 207 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Lja1g1450 | 207 | MobiDBLite | consensus disorder prediction | 138 | 169 | - | - | |
| Lja1g1450 | 207 | MobiDBLite | consensus disorder prediction | 49 | 70 | - | - | |
| Lja1g1450 | 207 | Pfam | HYPK UBA domain | 167 | 206 | IPR044034 | - | |
| Lja1g1450 | 207 | SMART | NAC_2 | 63 | 119 | IPR002715 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g1450 | Lja-Chr1 | 15579926 | 15582538 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g1450 | K03626 | - | gmx:100791967 | 297.36 |