Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1449 ATGACTGCGGAGACACAAGAAGAGCTTCTTGCGAAACACCTTGAACAGCAGAAGATCCATCATGATGAGCCTATAGTTGAGGATGATGAGGATGAAGATGACGATGATGAAGATGATGATGAGGATGACATTGGTCAAGAGGGTGATGGATCTGGTAGGTCCAAGCAGACAAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTCACAGGTGTCAGTCGTGTGACAGTCAAGAAGAGCAAGAATATCCTGTTTGTTATCTCGAAACCAGATGTTTTCAAAAGCCCAACTACGGATACGTACATTATATTTGGGGAAGCTAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCAGCAGAGCAGTTCAAGGCTCCCAATTTGAGCAATGTAGGATTGAAGCCTGAATCCTCTGGTGTTGCTCAGGATGATGAGGATGAGGATGAGGATGAGGATGAGAATGAGACTGGTGTTGATCCCAAGGATATAGAGTTGGTTATGACTCAAGCTACCGTGTCAAGATCGAAAGCAGTCAAAGCTCTCAAAGCCGCCAATGGCGACATTGTTGCTGCCATTATGGAGCTTACTACTTGA 615 0.4488 MTAETQEELLAKHLEQQKIHHDEPIVEDDEDEDDDDEDDDEDDIGQEGDGSGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTTDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNVGLKPESSGVAQDDEDEDEDEDENETGVDPKDIELVMTQATVSRSKAVKALKAANGDIVAAIMELTT* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1449 204 ProSiteProfiles NAC A/B domain profile. 57 122 IPR002715 -
Lja1g1449 204 MobiDBLite consensus disorder prediction 47 67 - -
Lja1g1449 204 MobiDBLite consensus disorder prediction 131 171 - -
Lja1g1449 204 Pfam NAC domain 60 115 IPR002715 -
Lja1g1449 204 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 3 203 IPR016641 GO:0005854
Lja1g1449 204 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3 203 - -
Lja1g1449 204 CDD UBA_NAC_euk 167 203 - -
Lja1g1449 204 MobiDBLite consensus disorder prediction 26 46 - -
Lja1g1449 204 MobiDBLite consensus disorder prediction 148 165 - -
Lja1g1449 204 Gene3D - 66 119 IPR038187 -
Lja1g1449 204 MobiDBLite consensus disorder prediction 8 25 - -
Lja1g1449 204 SMART NAC_2 60 116 IPR002715 -
Lja1g1449 204 MobiDBLite consensus disorder prediction 1 71 - -
Lja1g1449 204 Gene3D - 165 202 - -
Lja1g1449 204 Pfam HYPK UBA domain 164 203 IPR044034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1449 Lja-Chr1 15574171 15576710 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1449 K03626 - gmx:100791967 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1449 1 15574171 15576710 Lja1g1449 1 15574171 15576710 ECH