Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1448 ATGGCCAAAGGCGTGATATCTGACGAAGAAGATGAGGTCGAACTCGACGAGGAGGAGAGGGAACCCGTTGATGGGGAAGAATTGGAGGGTCGTGAGATAGACGATGACGACGAGGATGAAGAAGAAGAAGGGCAGGATGAATATGAAAAAGATGGATTTATAGTGGATGACATTGACGATGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGACTATGCGTTGCTGGAGGACAATAATATCAATATTCCTCGTCCGAAGGTAAATAAAAAGTTCAAGCGGCTGAAAAAGGGCCAGAGAGATATGGAGGATGAGACCTCTGGACTATCTGATGATGAGGAGTTTGATGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTCGGCGATGATGAAGGAGCTCCACTTGAAGACATTGTTGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGATGCTGACATTGGAGAAGATGATGAAATGGCCGACTTCATTGTGGAGGAAGAAGAAGTTGATGAGAATGGAGCCACTGTGAAGCGCAATAGGAAGCCGAACAGGAGAAAAAATAGGCAGGCACCAGGTGTCTCTTCATCAGCTTTACAAGAAGCTCAAGAGTTATTTGGTGATGTTGAGGAGTTGCTTGAGGCTCGCAATCTAAATCGATTAAAGGATAACAAAGTGACTACAATTGAAGATGAATTTGATCCTAGTGTTATTGCTGATAAATATATGACAGAAAAGGATGACCAGATCAGGGAGCTCGATGTTCCAGAGAGAATTCAGATATCGGAGGAGAGTGCTCCTCCTCTGGATGGAAGTAGTATAGACCAGGAGAGTACGTGGATTGTGAAACAATTGAAAAATGGAGCAGTCCCTTGGATTTGCAAGAAAGTTCCAAGCTCCCAAAATAGTGGAAAGGGCCCACCAATTGAAGGGAATGATATTATCCGATTTTTGGAACTACATCATGTGCAAAAGTTAGATATTCCTTTTATTGCCATGTACCGGAAGGAGGAGTGCTTAAGCCTATTGAAAGACCTAGAGCGATCTGATGCTGTTGATGAGGATTGGGATAAGAATAACAAGACACCTGCTCTGAAATGGCACAAGACGCTGTGGGCTATAAAGGACTTGGACAGGAAGTGGTTGCTTCTTCAGAAACGGAAGAGTGCTCTCCAATCATACTACAGTAAACGATTTGAAGAGGAATCTCGGCGTGTTTATGATGAGTCAAGACTGAATTTGAATAGGAAATTGTTCGACTCCGTTATGAAATCACTGAAGGAGGCAGAGTCTGAGAGGGAGATTGACGATGTCGACTCCAAGTTCAATTTGCATTTTCCACCAGGTGAAGCTGGTGTTGATGAAGGGCAATTCAAGAGGCCAAAAAGGAAGTCATTGTATTCAGCTTACAGTAAGGCAGGTCTATGGGAGGTTGCAAGCCGGTTTGGCTGTAGTTCTGAGCAACTTGGGTTGTATCTGATAGATGTTGTTCCGCATGAGGTTGAAGATCCAAAGGAAACACCAGATGAGTTAGCTTCTAACTTCACATGTGCAATTTATGATTCCTCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCGGCTGTTGAGATAAGCTGTGAGCCTAGCATTAAGAAACATGTTCGTAGCCACTTTCTTGACCATGCTGTGGTGTCAACTGTACCGACTGCTGATGGAAATGTGACAATTGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCAAAAGAAGCCTTTGTCTCAATTTGAGGATGCACAATGGCTCCTAATACAGAAGGCAGAAGAGGAAAAATTGATTGTAGTTACGATTAAGCTGCCCGAAGAGGATCTAAATAAGTTGCTAGACCAATTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAGCAGAGGAAGTTGATACTGCATGATGCAATTTTTCGATTTCTTTTACCATCAATGGAAAAAGAAGCAAGAAGCATCTTGACAAGCAAAGCAAAGAATTGGGTACTCATAGAGTATGGGAAGGCCTTGTGGAATAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAAGGATCTTAGCTCAGATGATGAGGCTGGTCCTAAGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTCTTATGTTAGATTCATCAGGAGAAGTGCTAGATGTGCTTTACACTGGGTCACTTACTTTTAGGTCACAGAATGTAAATGACCAACAGAGGAAGAAGAATGACCAGGAACGTGTGTTGAAGTTTATGACTGATCACCAACCACATGTCGTTGTTTTAGGAGCAGTTAACTTGTCTTGTACTCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGCAATGGATGGGCTCAGCATTGTGTATGGTGATGAATCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAGCTTCCTTCGCAGCAAGGTATAGTGAGGCGGGCTGCTGCTCTTGGCCGTTATCTCCAAAACCCATTGGCGATGGTTGCAACATTATGTGGACCCAGAAGGGAAATATTATCGTGGAAACTGAGCTCTTTTGAGAGCTTTCTCAACCCAGACGATAAATTTGGGATGATTGAGCAGGTTATGGTAGATGTAACCAATCAGGTCGGTTTGGACATTAATCTAGCAATAAGTCATGAATGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCTCGGAAGGCTGCATCCTTGCAGAGATCCTTGGTAAGAGCTGGTGCAATTTTCACTCGAAAGGACTTTGTGAAAGAACATAAACTTGGTAAGAAGGTGTTTGTCAATGCAGCTGGTTCCTTGCGTGTCCGGAGAAGTGGATTGGCTCTTAACAGCGGCCAATATATTGATTTGCTGGATGATACAAGAATTCATCCAGAATCTTACGCTATTGCACAAGAGTTAGCTAGAGATATGTTACAGGAAGATGTCACAGATGTAAATGATGAGGATGAGCCCATAGAACACGTGAGAGACAGACCCAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCATCGCATAAAGGATGTCTGAACAAAATAAGAACTTTGTATGATATAAAAAGAGAACTGATTGAAGGTTTTGAGGATTGGCGTAAGCCATATGAAGAACCGAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAAGAGACACTTGCTGAAGGGAAAATTGTCCAAGTTACAGTTCGCCGAGTACAGGCCCAGAAAGCAATATGCGGGCTTGAATCTGGAATGACTGGAATCCTAATGAAAGAAGACTATATAGATGACTGGAGAGATATAATTGAGTTATCTGATAGGTTGCATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAGAATAGGTATCAAGTCTTTCTTGTTTGTAAGGATAGCGAAATGAGGAGTAATCGGTTACAGAATAACTGCGAACTTGATCCCTATTACCATGAAGACCAGAGCTGCTTACAGAGTGAACATGACAAAGCTCGGAAACAAAAGGAGCTTGCAAAGAAGCATTTCAAGCAAAGGATGATTGTTCATCCACGATTTCAGAACAGTACTGCAGATGAAGCAATGGAGTTCTTATCTGACAAAGATCCTGGAGAAAGTATTATCCGCCCTAGTTCACGTGGACCCTCATATCTTACCTTAACACTTAAAATTCATGATGGAGTATATGCCCACAAGGATATAGTTGAAGGTGGTAAGGAACACAAGGACATCACAAGCTTACTTAAAATGGGGAAGACGCTAAAAATTGGAGATGATACTTTTGAGGATTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGACTCACTTGAAAGCAATGTTAAACTACCGTAAGTTTAGGAAGGGTTCAAAAGCAGAAGTTGATGAACTTTTGAGGATGGAAAAAGCTGAGTATCCTATGCGCATAGTCTACGGTTTTGGCATCTCCCACGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCGCACCACGAGTACATTGGGCTTTACCCAAAAGGATTCAGGTTCCGGAAGAAGATGTTTGAGGATATTGATCGGCTTGTGGCATATTTTCAGAGGCATATTGATGATCCCTTACATGATTCAGCCCCCTCCATTAGATCCGTAGCTGCTATGGTACCAATGCGAAGCCCTGCAGCTGGTGGTTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTTCGAACAGTGAGGGTGGCTGGAAAGGCTACTCTTATGATAGAGATCGGTCTTCTACCCCTGGTTCCAGGACAGGACGGGCTGATTACAGAAACAATGGGAATCGAGATGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTCGTGGACGTGGTCGAGGTTCTTACAGCAGTAGTAGAGGACACAACTCCAATAATGAAAGGCAGGACTCTGGTTATGGTGCTGGCAGATGGGGTCCTGCATCGAAAGATGGGAATGATGGTTTAAGCAATTTCCCAGGGGCGAAGGTTCAAAATTCCCCTGGAAGGGAAGCATTTCCTGGTGGTTGGGGTGGAAGTGATGGAGGCAGTGGTTGGGGAGGTGGAGCTAGTACCGGCGACAATGGTGGCTGGGGACAAGGGAGTGGTGGTGATCAAAACGATGCTCAAGAGGGAAGCTCTGGCTGGGGAACAGGCACCAAGAAAGCAGGTGAGGATGGATGGACTGGCGGTGGATCTTGGTGA 4902 0.4374 MAKGVISDEEDEVELDEEEREPVDGEELEGREIDDDDEDEEEEGQDEYEKDGFIVDDIDDEEEQDEEERAESDEERQKKKKRKKKEEYVLDEDDYALLEDNNINIPRPKVNKKFKRLKKGQRDMEDETSGLSDDEEFDGSGKVGRTAEEKLKRSLFGDDEGAPLEDIVEEEEQGEEEEDADIGEDDEMADFIVEEEEVDENGATVKRNRKPNRRKNRQAPGVSSSALQEAQELFGDVEELLEARNLNRLKDNKVTTIEDEFDPSVIADKYMTEKDDQIRELDVPERIQISEESAPPLDGSSIDQESTWIVKQLKNGAVPWICKKVPSSQNSGKGPPIEGNDIIRFLELHHVQKLDIPFIAMYRKEECLSLLKDLERSDAVDEDWDKNNKTPALKWHKTLWAIKDLDRKWLLLQKRKSALQSYYSKRFEEESRRVYDESRLNLNRKLFDSVMKSLKEAESEREIDDVDSKFNLHFPPGEAGVDEGQFKRPKRKSLYSAYSKAGLWEVASRFGCSSEQLGLYLIDVVPHEVEDPKETPDELASNFTCAIYDSSEEVLKCARHMAAVEISCEPSIKKHVRSHFLDHAVVSTVPTADGNVTIDSFHQFAGVKWLQKKPLSQFEDAQWLLIQKAEEEKLIVVTIKLPEEDLNKLLDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARSILTSKAKNWVLIEYGKALWNKVSVGPYQQKEKDLSSDDEAGPKVMACCWGPGKPQTTFLMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHAMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAAALGRYLQNPLAMVATLCGPRREILSWKLSSFESFLNPDDKFGMIEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVKEHKLGKKVFVNAAGSLRVRRSGLALNSGQYIDLLDDTRIHPESYAIAQELARDMLQEDVTDVNDEDEPIEHVRDRPSYLKNLDVEEYASHKGCLNKIRTLYDIKRELIEGFEDWRKPYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYIDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNCELDPYYHEDQSCLQSEHDKARKQKELAKKHFKQRMIVHPRFQNSTADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKIHDGVYAHKDIVEGGKEHKDITSLLKMGKTLKIGDDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGSKAEVDELLRMEKAEYPMRIVYGFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPLHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGSNSEGGWKGYSYDRDRSSTPGSRTGRADYRNNGNRDEHPSGVPRPYGGRGRGRGSYSSSRGHNSNNERQDSGYGAGRWGPASKDGNDGLSNFPGAKVQNSPGREAFPGGWGGSDGGSGWGGGASTGDNGGWGQGSGGDQNDAQEGSSGWGTGTKKAGEDGWTGGGSW* 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1448 1633 MobiDBLite consensus disorder prediction 135 160 - -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 1522 1537 - -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 9 70 - -
Lja1g1448 1633 Pfam Acidic N-terminal SPT6 34 123 IPR028083 -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 114 227 - -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 71 91 - -
Lja1g1448 1633 SUPERFAMILY Nucleic acid-binding proteins 1115 1195 IPR012340 -
Lja1g1448 1633 SUPERFAMILY Ribonuclease H-like 736 892 IPR012337 -
Lja1g1448 1633 Coils Coil 55 87 - -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 1 92 - -
Lja1g1448 1633 CDD SH2_Nterm_SPT6_like 1242 1330 IPR035019 -
Lja1g1448 1633 Gene3D SH2 domain 1228 1339 IPR036860 -
Lja1g1448 1633 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1596 IPR017072 GO:0032968
Lja1g1448 1633 MobiDBLite consensus disorder prediction 1471 1633 - -
Lja1g1448 1633 Pfam Helix-hairpin-helix motif 896 997 IPR032706 -
Lja1g1448 1633 Gene3D - 294 484 IPR023319 -
Lja1g1448 1633 SMART rnase_8s 737 855 IPR006641 GO:0006139
Lja1g1448 1633 SMART S1_6 1118 1191 IPR022967 -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 1594 1616 - -
Lja1g1448 1633 CDD SH2_Cterm_SPT6_like 1341 1427 IPR035018 -
Lja1g1448 1633 Gene3D - 261 1000 - -
Lja1g1448 1633 SUPERFAMILY SH2 domain 1247 1331 IPR036860 -
Lja1g1448 1633 SUPERFAMILY Tex N-terminal region-like 339 716 - -
Lja1g1448 1633 PIRSF Spt6 2 1497 IPR017072 GO:0032968
Lja1g1448 1633 SUPERFAMILY RuvA domain 2-like 908 998 IPR010994 -
Lja1g1448 1633 Gene3D SH2 domain 1340 1435 IPR036860 -
Lja1g1448 1633 SUPERFAMILY RuvA domain 2-like 1011 1095 IPR010994 -
Lja1g1448 1633 Pfam SH2 domain 1209 1426 IPR035420 -
Lja1g1448 1633 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 84 1596 - -
Lja1g1448 1633 MobiDBLite consensus disorder prediction 162 198 - -
Lja1g1448 1633 Gene3D - 727 1112 IPR037027 GO:0006139
Lja1g1448 1633 Gene3D - 1006 1093 IPR042066 -
Lja1g1448 1633 Pfam Holliday-junction resolvase-like of SPT6 735 892 IPR028231 -
Lja1g1448 1633 Gene3D - 1113 1200 IPR012340 -
Lja1g1448 1633 ProSiteProfiles S1 domain profile. 1120 1191 IPR003029 GO:0003676
Lja1g1448 1633 Pfam HHH domain 1012 1094 IPR041692 -
Lja1g1448 1633 Gene3D - 485 930 IPR023323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1448 Lja-Chr1 15560682 15571835 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1448 K11292 - gmx:100809136 2571.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1448 1 15560682 15571835 Lja1g1448 1 15560682 15571835 ECH