Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1439 ATGACAGAGGTGTCGATGTGTAGCAGCAGTACCTCTGAGTTGAGTCCAGATGAGGAGAGGATCATGATCAGAGACATTGCTCTTGCTTCTCAAGCTAACAGCAAAGAAGGCGACACCTTCTTTTTGATCACCCAGAGGTGGTGGCAACATTGGATTGAATATGTGAACCAAGACCACACAAACACTTCTTATGATGGATCTTCCTTTTTAGAACAATGTGATATGGCCTATTCGAATGTTTCAAAGAAACCGTCTGGTATTGATAATTCTGATTTAATACATGATGTTGCACCAGAAGACTCTAGTACAGGTATTGAGATTCATGATACTCTTTTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATTTACGTGGTATGGTGGTGGACCTACATTGCCAAGGAAAGCTATCAGTTTAGGTCTTTCCCAGACAGAATTGACTGTAGAGGTGTACCCTTTACGGCTTCAGTTACTTGTGTTGCCAAAAAATGAACGTTCCTCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGGAAAGCTTGTGAAATATTTGATCTTCAGCTGGACCAAGTGCGCATTTGGGATTACTATGCCCGTCGGAAGCATACCTTGATGAATGACATGGACAAAACTCTTGATGATGCCAATTTACAAATGGATCAAGATATTCTTGTTGAGGTCCTCAGCAATACAAATAGCACAAGTGCTGCTCTAGAGAATGGATCAGCACAGAGGGAAGCAAATTCTGTTCTTGTGGAGCCTCCAAAGTCAAGTTTATCAATTGCTGGTGGCCTGTCTGCCAGCAAGGGGGCATCTAGAGGCTACAATGTGGAACTTTCTTCATCTCAGAACCTAACTTCTCCAGTCAGAGATGTGGAAAATCCTTATGGAACTAGTGGTGTCACCACAAGAGGTTCATTTGGTGGTCTCACTGGATTGATGAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAGTGTCTAGTTCATACACCAGAATTTGCTAAGTACTTCAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTGGGCATGGTTGGTGAACTAGCCCTTGCATTTGGTGAGTTGCTTCGGAAATTATGGGCACCTGGGCGAGCACCAATTGCCCCTAAGCCTTTCAAAACAAAACTTGCTCGCTTTGCACCTCAGTTCAGTGGACACAGTCAGCATGATTCTCAGGAGCTTTTAGCATTTCTACTGGATGGTCTCCATGAAGACCTGAATCGTGTAAAGCACAAACCATATATAGATTCTCGAGATGCTGATGGCCGACCAGATGAAGAAGTGGCTGATGAGTATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGCCAGGGGCAATACAAGTCGACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACTTTTGATCCTTTTATGTACCTTTCGCTGCCACTCCAGTCCACCGGCACTAGGACCATGACAGCGACAGTTTTTACATGTGATGGAACTGCCCTGCCATCTCCTATTACAGTAACTGTGTCCAAGCAGGGAAGATGCAGAGATCTTATCCAGGCGCTTAGCAATGCTTGCTCATTGAAGCCTAATGAGAGGCTGTTGCTGGTAGAGATTCGAAACCATTTGATCCATAGATTTTTTGAAGATCCTCTTCAATTGTTGTCCTCAATCAAAGATGATGACCGCCTTGCTGTTTACAAGATTCCGAAGATGGAAAAAAATACAAAGTATCTCCAGTTGATACATCGCCGTAGAGAGCAGAATAGTGACTCCCTGACCATATCTGGATGGAAACCATATGGAACACCCATTGTTTCATTGATCTCATGTGATGATACGGTCACAAGAGGTGATATACAGGCAATAGTTAATCGTATGCTCTCTCCTCTGCTAAAGAAAGGTGGCAATGTAGAACAGGCTGCTTTGTCTGAAACCAGCATCCCAAAAGAAACATCTGACCAATCCAGTGCTGCCAATGTGGTGTCAAATTCAGTCATTTCAAAGACACGACAAATGCCAACATTACCTCTTCTGTTGGTAGACGATAACAATGCTTGCATTGATCTTTCTATGGGAGGGGACAAAGTAGTTCAATTGCCACCATCATCTCCAACTGTTCTGGTGTATATTGATTGGTCTCAAAAGCTTCTGGAGAAGTATGATACTCGTCCACTTGAGGCTTTGCCAGAAGTTTTGAAATACGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACTTGCTTGGAATCTTTTCTGCGTGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGGCAAGCAAGCAAAAAGCTTGATTTATGGAGGCTCCCAGAGGTTTTGGTCATTCATTTAAAGAGGTTCTCATACAGCAGGTCAATGAAGCACAAGCTTGAGACATTTGTTAACTTACCCATTCATGATTTTGACTTAACAAGTTACATAGCCAACAAAAACAACTCTCGTCCCCAACTGTATGAACTGTATGCCCTCACAAATCATTATGGTACATTGGGTAGTGGGCATTACACTGCACATATCAAGCTTTTAGATGAAAACAGGTGGTACAATTTCGATGACACCCATATATCAGCTATAAGTGAAGATGAGGTTAACACCGCTGCTGCGTATGTTTTGTTTTACCGGAGGGTGAGGACTGATGATGCTGCTGTAAACAATGGGGCTTAG 2772 0.4275 MTEVSMCSSSTSELSPDEERIMIRDIALASQANSKEGDTFFLITQRWWQHWIEYVNQDHTNTSYDGSSFLEQCDMAYSNVSKKPSGIDNSDLIHDVAPEDSSTGIEIHDTLLEGRDYVLLPQEVWNQLFTWYGGGPTLPRKAISLGLSQTELTVEVYPLRLQLLVLPKNERSSIRISKKETIGQLHRKACEIFDLQLDQVRIWDYYARRKHTLMNDMDKTLDDANLQMDQDILVEVLSNTNSTSAALENGSAQREANSVLVEPPKSSLSIAGGLSASKGASRGYNVELSSSQNLTSPVRDVENPYGTSGVTTRGSFGGLTGLMNLGNTCFMNSAIQCLVHTPEFAKYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRAPIAPKPFKTKLARFAPQFSGHSQHDSQELLAFLLDGLHEDLNRVKHKPYIDSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSTGTRTMTATVFTCDGTALPSPITVTVSKQGRCRDLIQALSNACSLKPNERLLLVEIRNHLIHRFFEDPLQLLSSIKDDDRLAVYKIPKMEKNTKYLQLIHRRREQNSDSLTISGWKPYGTPIVSLISCDDTVTRGDIQAIVNRMLSPLLKKGGNVEQAALSETSIPKETSDQSSAANVVSNSVISKTRQMPTLPLLLVDDNNACIDLSMGGDKVVQLPPSSPTVLVYIDWSQKLLEKYDTRPLEALPEVLKYGPVTKKARTEPLSLYTCLESFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNLPIHDFDLTSYIANKNNSRPQLYELYALTNHYGTLGSGHYTAHIKLLDENRWYNFDDTHISAISEDEVNTAAAYVLFYRRVRTDDAAVNNGA* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1439 923 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 321 336 IPR018200 GO:0004843|GO:0006511
Lja1g1439 923 Gene3D - 5 156 IPR035927 -
Lja1g1439 923 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Lja1g1439 923 SUPERFAMILY Cysteine proteinases 318 912 IPR038765 -
Lja1g1439 923 SUPERFAMILY DUSP-like 15 143 IPR035927 -
Lja1g1439 923 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 320 912 IPR028889 -
Lja1g1439 923 Gene3D Cysteine proteinases 731 919 - -
Lja1g1439 923 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 12 921 - -
Lja1g1439 923 Pfam Ubiquitin carboxyl-terminal hydrolase 320 909 IPR001394 GO:0004843|GO:0016579
Lja1g1439 923 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 854 871 IPR018200 GO:0004843|GO:0006511
Lja1g1439 923 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Lja1g1439 923 Gene3D - 157 244 - -
Lja1g1439 923 SMART dusp 33 146 IPR006615 GO:0004843
Lja1g1439 923 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 921 - -
Lja1g1439 923 Gene3D Cysteine proteinases 310 545 - -
Lja1g1439 923 CDD Peptidase_C19R 757 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1439 Lja-Chr1 15410590 15421082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1439 765 914 Miscellaneous Gene Families AT4G31670 33.333 4.92e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1439 - - aprc:113861233 1620.91