Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1407 ATGAATAATATTTCTGGAAGACCACTTAATGGAGAAGTAGAAGATGATGATGAAGATGAAGCTAATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAAGATAGATCATGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATAATACAGCCATTCACCATGCCCAGTATCGCAGGCGCCTTCGTGCCCTTGCATCCAAGGCAGCTACTGCACGAATTCAGAAGGGTCTTATACGATACCTTTACATTGTTGTAGACCTGTCCAAGGCAGCTGCTGAGACGGACTTTCGACCAAGTAGGATGGCTGTGATAGGGAGACTGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGCCTGGTTACCATAAAAGATGGGGTTGCTCATTGCTTAACAGATCTTGGTGGCAGTCCTGAGTCCCACATCAAAGCTTTGACGGGTAAACTGGAGTGCTCAGGTGACGCATCCCTACAAAACGCACTAGAGCTTGTTGTTGGCTATCTAAATCAAATCCCATCATATGGTCATCGTGAAGTTCTGATCTTATACTCGGCTCTAAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAGAAAGAGTAAAATAAGGTGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAACATATCTGCCAAGAAACAGGAGGAACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAGTTCTAGAGCATGCTCCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAACTTAATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCAGTTGCAATTTGTACTTGTCATGAAGAGGCTAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGTCGCGTCTGTGGATTAACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTCTTTCCTATAGTGCCATTTGATGAAATCTCTCCATCGTCTCGAAATGATCCAAGCCACAGTTTCTCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACGTGCCTGGAATTTCGGTTACTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGTTTCAGGCATTCTACGTCAGTAACTGCTGCCCAATGA 1269 0.4429 MNNISGRPLNGEVEDDDEDEANGGGLEAWERTYAEDRSWESLQEDESGLLRPIDNTAIHHAQYRRRLRALASKAATARIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIREFFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETGGTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSFSNTCFGCQQSLLSQGNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSTSVTAAQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1407 422 Pfam TFIIH C1-like domain 363 411 IPR004595 GO:0006281|GO:0008270
Lja1g1407 422 Pfam Ssl1-like 90 280 IPR007198 -
Lja1g1407 422 Gene3D von Willebrand factor, type A domain 80 265 IPR036465 -
Lja1g1407 422 TIGRFAM ssl1: transcription factor ssl1 302 411 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lja1g1407 422 SUPERFAMILY vWA-like 81 248 IPR036465 -
Lja1g1407 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 418 IPR013083 -
Lja1g1407 422 SMART C1_4_2 363 411 IPR004595 GO:0006281|GO:0008270
Lja1g1407 422 SUPERFAMILY Cysteine-rich domain 337 410 IPR046349 -
Lja1g1407 422 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g1407 422 SMART VWA_4 84 260 IPR002035 -
Lja1g1407 422 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 19 409 - -
Lja1g1407 422 PIRSF TFIIH_SSL1 5 412 IPR012170 GO:0000439|GO:0006289|GO:0006351
Lja1g1407 422 ProSiteProfiles VWFA domain profile. 86 225 IPR002035 -
Lja1g1407 422 ProSitePatterns Zinc finger C2H2 type domain signature. 384 404 IPR013087 -
Lja1g1407 422 CDD vWA_transcription_factor_IIH_type 82 264 IPR007198 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1407 K03142 - gmx:100803090 780.015