Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1400 ATGCTTTACTTCATTATATCCTTTGTCTCCTTTGTCCTCCTTTCCAAGTCCTTTACTAGTAAGGAAAGAGGGACAAAACTAGTTTCAACAGGGTTTTTGAGGAACCTGTCCAATTTTCTAGTTTCTAGGCTCAGGACAGGAAACATTCCTTCTAGTTTTTCTCATTTTTCTCTTGGTATGCCATTGAGAAAGAAGAGTTTAGTATCTAAAGTGGAGAATGGGGAAAAGGGTGACAAGGTTTGTCTCTTGGATTTGCCTGATTTGCCATTGGAGTGTATCCTTGAGCACCTTTCACCATCTGAGTTAACCAATGTGGCAGCAGTGTGCACTTCTCTCAGAGGTAGATGTCTAAGTGATTATTTATGGGAGAAACACATGGAGAGGAAATGGGGTAACGTGTTTAGTGATGCTGCTTATAGACAATGGAAAGTACATCTAGCTTCCAGAGACAGATTGAAGATCTCAAATCAGCACAAGCAGAAAGGAATGTTTGATTTCCTTCATGGTTTTCACCCCTTCTTATGGATCAAATCAAAATCAGGAAAAGCTAGACAATCAAGGACTTCATTGCCAGATGATTCAGTTTTTGCTCTTTATCTTTCTCTTGAGAGTGGGAAATTTTGGTTCCCTGCTCAAGTTTATAACCGCGAGAATGGTCATGCTGGGTTCATGCTCTCATGTTATGATGCACAACTTTGCTATGACTCTAGAACTGACACCTTTCAGGCAAGGTATTCACCTCATGGGAGATGGACAACGGAGGAAAACATTCAATGGGACCGGTTGAGAGTACCACCAATTGACTCTTCTCCAAATGTTCTTCATACCTCTGACTGTTTGGATGACTTAAGGCCTGGGGATCATGTTGAGATCCAGTGGAGAAGAAACAAAGAGTTTCCTTATGGTTGGTGGTATAGTGTTGTAGGTCATTTAGAAACATGTCAAGGGATTGAGAACCATTGTCATTGTCACAATAATGATATGGTGATTTTGGAGTTCACCCAATACTCAGCAGGGTCCAGATGGAGACAAGTAGTGATAAACAGGAAACATCATAGAGAACAAGGCAATGAAATTGAAGGCTTCTATGGGGGGATCAGGAAGCTGCAAAGCAAGGAAGAAATTACAAGGTGGAAAAACTTGTGGCCAACAAAAACTGTGGAATAG 1167 0.4105 MLYFIISFVSFVLLSKSFTSKERGTKLVSTGFLRNLSNFLVSRLRTGNIPSSFSHFSLGMPLRKKSLVSKVENGEKGDKVCLLDLPDLPLECILEHLSPSELTNVAAVCTSLRGRCLSDYLWEKHMERKWGNVFSDAAYRQWKVHLASRDRLKISNQHKQKGMFDFLHGFHPFLWIKSKSGKARQSRTSLPDDSVFALYLSLESGKFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRTDTFQARYSPHGRWTTEENIQWDRLRVPPIDSSPNVLHTSDCLDDLRPGDHVEIQWRRNKEFPYGWWYSVVGHLETCQGIENHCHCHNNDMVILEFTQYSAGSRWRQVVINRKHHREQGNEIEGFYGGIRKLQSKEEITRWKNLWPTKTVE* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1400 388 ProSiteProfiles F-box domain profile. 79 125 IPR001810 GO:0005515
Lja1g1400 388 SUPERFAMILY F-box domain 82 151 IPR036047 GO:0005515
Lja1g1400 388 Gene3D - 65 158 - -
Lja1g1400 388 SMART fbox_2 85 125 IPR001810 GO:0005515
Lja1g1400 388 PANTHER ESTS AU081301(E20138) 1 387 - -
Lja1g1400 388 Pfam F-box domain 82 124 IPR001810 GO:0005515
Lja1g1400 388 PANTHER F-BOX-LIKE PROTEIN 1 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1400 Lja-Chr1 14903866 14906598 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1400 - - gmx:100778469 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1400 1 14903866 14906598 Lja1g1400 1 14903866 14906598 ECH