Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1387 ATGGCACCTGTGCTTCTTCTTCGTCCTCCTCTGCTTCGCTTCATGGCCTCTCGCTACTTCTTCACTGCTTCTTCCTTCTCTCTTCGTTCTCTTCCTTATCCTCATTCTTCTTCTTCTTCCACTTCTTCTCTTCCTCTTTCTACCCTCTCAAAACCCAGGACGAGTTTTTCTCAGAGAAAATGGTCTATTTGCCCTTTAGTACCTTGTTCTGTGACTCCAAAGGCGTATATGTCGTCGGTGCCAGCAGCTGAACCTTCTCAGAAAAATGAAAGTTCTAAAGCTTATGGCTCTGATCAAATTCAGGTACTTGAAGGTTTGGATCCTGTAAGAAAAAGGCCCGGGATGTATATTGGAAGCACTGGCCCCCGTGGGTTGCATCATTTGGTGTATGAGATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCCAGGATTGATGTTGTTTTACTTGCAGATGATTCTGTGAGCATCACTGACAATGGTCGTGGGATTCCTACTGACATGCATCCAACTACAAATAAATCTGCATTGGAGACAGTCTTGACGGTCTTGCATGCTGGTGGAAAATTCGGTGGTGCCAAAAGTGGCTACTCTGTTTCAGGAGGTTTACATGGTGTTGGTTTATCAGTTGTTAATGCTTTGTCTGAGGCACTGGAGGTAACAGTTTGGCGTGATGGAATGGAATACATGCAGACGTATTCTCGTGGTAAACCAATTACAATTCTGAAAGGCCTTGTGCTTCCTGCTGAAAAGAGAGATCTTCAAGGGACATCAATCAGATTTTGGCCTGACAAAGAAGTATTCACCACCACTATTCAGATTGATTACAACACAATAGCTGGGCGCGTTAGGGAGTTGGCTTTCCTCAACCCAAAGCTTACTATCACGCTTCGTAAAGATGACAGTGATCCAGAAAAGGTCCAATATAATGAGTTTTTCTATGCTGGGGGATTGGTAGAATATGTGAATTTGCTCAACACTGATAAGAAAGCTTTGCATGATGTCCTGAGTTTCAGAAAAGAAATAGATGGAATCACAGTTGATATAGCTTTGCAATGGTGTGAAGATGCATATTCAGATACAATACTAGGATATGCTAACAGTATACGCACTGTTGACGGTGGCACACATATAGATGGTATGAAGGCTTCTTTAACAAGAACACTGAATAGTCTTGGAAAGAAATCCAAAGTCATCAAGGAAAAGGATATCACTTTAAGTGGCGAGCATGTCAGAGAGGGTTTAACTTGTGTTGTCTCAGTCAAGGTTCCAAATCCAGAGTTTGAAGGGCAAACAAAGACAAGGTTGGGCAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAAGAGTATCTTACTGAGTATTTGGAATTGCATCCAGACGTTCTTGAGTTAGTGCTATCTAAAGCCCTTAATGCTTTCAAGGCAGCTCTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAAAGTGTATTGAAATCTTCATCTCTTCCGGGAAAACTCGCTGATTGTTCATCCTCAAATCCTGAAGAATGTGAAATTTTTATAGTTGAAGGCGATTCAGCTGGAGGAAGTGCAAAGCAAGGGCGTGATAGGCGCTTCCAGGCCATTCTCCCTTTGAGGGGTAAGATTCTGAATACTGAAAGGAAGGATGAAGCAGCAATGTACAAAAATCAAGAGATACAAAATTTAATTCTTGGTCTTGGTCTTGGAGTGAAGGGAGAGGATTTTAAAATGGATGCACTCCGATATCACAAGATTATTATTTTGACTGATGCTGATGTAGATGGTGCCCACATCCGAACTCTGCTATTGACATTTTTCTTTAGATATCAGAGAGCTTTGTTTGATGCAGGTTGCATATATGTTGGTGTTCCGCCACTATACAAGGTCGCTAGGGGAAAACAAGTGCAATATTGCTATGATGACGCTGATCTTAAAAATATTCAGAAGACATTCCCTCCTAATGCTTCATACAACTTGCAAAGGTTTAAAGGGTTGGGAGAGATGATGCCTTTGCAACTATGGGAAACAACCATGAATCCAGAAAGCAGGTTGTTGAAGCAGTTAAAGGTTGAAGATGCAGCTGAAGCAAATATTGTTTTCTCGTCTCTTATGGGTGCTCGGGTGGATGGTCGAAAGGAGCTGATACGAAATGCTGCAAACATGATTAATATGGATCAGTTAGATATTTGA 2211 0.4179 MAPVLLLRPPLLRFMASRYFFTASSFSLRSLPYPHSSSSSTSSLPLSTLSKPRTSFSQRKWSICPLVPCSVTPKAYMSSVPAAEPSQKNESSKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASRIDVVLLADDSVSITDNGRGIPTDMHPTTNKSALETVLTVLHAGGKFGGAKSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGMEYMQTYSRGKPITILKGLVLPAEKRDLQGTSIRFWPDKEVFTTTIQIDYNTIAGRVRELAFLNPKLTITLRKDDSDPEKVQYNEFFYAGGLVEYVNLLNTDKKALHDVLSFRKEIDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLELVLSKALNAFKAALAAKRARELVRQKSVLKSSSLPGKLADCSSSNPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNTERKDEAAMYKNQEIQNLILGLGLGVKGEDFKMDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLYKVARGKQVQYCYDDADLKNIQKTFPPNASYNLQRFKGLGEMMPLQLWETTMNPESRLLKQLKVEDAAEANIVFSSLMGARVDGRKELIRNAANMINMDQLDI* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1387 736 Pfam DNA gyrase B 320 489 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 204 218 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 586 602 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 367 380 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 519 533 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 624 636 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 159 172 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 666 682 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 604 621 - -
Lja1g1387 736 PRINTS DNA topoisomerase II family signature 124 139 - -
Lja1g1387 736 ProSitePatterns DNA topoisomerase II signature. 521 529 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 Gene3D - 91 318 IPR036890 -
Lja1g1387 736 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 95 309 IPR036890 -
Lja1g1387 736 CDD TopoII_Trans_DNA_gyrase 319 473 - -
Lja1g1387 736 PANTHER DNA GYRASE SUBUNIT B 71 736 - -
Lja1g1387 736 SUPERFAMILY Type II DNA topoisomerase 494 732 IPR013760 GO:0003918|GO:0005524
Lja1g1387 736 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 122 269 IPR003594 -
Lja1g1387 736 SMART topII5 124 727 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 Gene3D - 498 736 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 CDD TOPRIM_TopoIIA_GyrB 517 631 IPR034160 -
Lja1g1387 736 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 71 736 - -
Lja1g1387 736 Pfam Toprim domain 518 619 IPR006171 -
Lja1g1387 736 Gene3D - 319 497 IPR014721 -
Lja1g1387 736 SMART HKATPase_4 120 270 IPR003594 -
Lja1g1387 736 CDD HATPase_GyrB-like 125 312 - -
Lja1g1387 736 ProSiteProfiles Toprim domain profile. 517 624 IPR006171 -
Lja1g1387 736 SUPERFAMILY Ribosomal protein S5 domain 2-like 320 490 IPR020568 -
Lja1g1387 736 TIGRFAM gyrB: DNA gyrase, B subunit 95 731 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 687 699 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 319 341 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 95 105 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 276 291 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 569 578 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 291 304 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 411 427 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 703 719 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 459 473 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 PRINTS DNA gyrase subunit B signature 473 493 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Lja1g1387 736 Pfam DNA gyrase B subunit, carboxyl terminus 662 722 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1387 K02470 - gmx:100807172 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1387 1 14774984 14790409 Lja1g1387 1 14774984 14790409 ECH